# Cytopathologic Features of Metastatic Malignant Mesothelioma With SMARCB1 (INI‐1) Deficient Diagnosed by Ultrasound‐Guided Fine‐Needle Aspiration: A Case Report

**Authors:** Jun Yang, Juandi Liu, Jing Jin, Deng Pan, Lei Shao

PMC · DOI: 10.1002/dc.70073 · Diagnostic Cytopathology · 2025-12-29

## TL;DR

A rare case of metastatic mesothelioma with a specific genetic deficiency was diagnosed using ultrasound-guided fine-needle aspiration and confirmed through immunohistochemistry.

## Contribution

This case report presents a rare diagnosis of SMARCB1 (INI-1) deficient mesothelioma using fine-needle aspiration and immunohistochemistry.

## Key findings

- INI-1 deficiency was confirmed in metastatic mesothelioma using FNA and IHC.
- Cytopathologic features included pleomorphic nuclei and prominent nucleoli in tumor cells.
- Immunohistochemistry showed positive calretinin and D2-40 but negative TTF-1 and WT-1.

## Abstract

Malignant mesothelioma (MM) is a rare yet aggressive neoplasm that arises from mesothelial cells lining the thoracic and abdominal cavities, the pericardium, and the tunica testis. Characterized by rapid progression, high invasiveness, and a poor prognosis, MM poses significant clinical challenges. SMARCB1, also referred to as INI‐1, hSNF5, or BAF47, is located on chromosome 22q11.2 and serves as a critical subunit of the SWI/SNF chromatin remodeling complex. INI‐1 functions as a tumor suppressor and plays a vital role in DNA damage repair and regulation of cell growth. Case Presentation: A 37‐year‐old Chinese male with no history of asbestos exposure but a 10‐year smoking history (30 cigarettes per day) presented with a cough lasting one month and a fever persisting for one day. Computed tomography (CT) showed multiple enlarged supraclavicular lymph nodes measuring up to 30 × 15 mm bilaterally. An ultrasound‐guided fine‐needle aspiration (FNA) of the left supraclavicular lymph nodes was subsequently performed. The SurePath‐prepared liquid‐based cytopathology (LBC) using Papanicolaou‐staining revealed tumor cells organized in clusters with indistinct borders. The cells exhibited abundant cytoplasm and pleomorphic round nuclei, which displayed prominent nucleoli and mitotic activity. Additionally, scattered lymphoid fragments were observed in the background. The FNA sample was formalin‐fixed and paraffin‐embedded for cell block; 4‐μm thick sections were prepared. Histological examination using HE‐stained cell block revealed a solid sheet‐like tumor growth characterized by minimal stroma and the absence of fibrovascular cores. The neoplastic cells had well‐defined borders, abundant eosinophilic (partially clear) cytoplasm, and round‐to‐oval nuclei displaying focal atypia, finely dispersed chromatin, and prominent nucleoli. Immunohistochemistry (IHC) demonstrated positive staining for CK(pan), calretinin, D2‐40, and SMARCA4, whereas NapsinA, TTF‐1, P40, NUT, and WT‐1 yielded negative results. The confirmed loss of INI‐1 expression ultimately led to the diagnosis of metastatic INI‐1 deficient MM. Conclusion: This case highlights the cytomorphological features and immunophenotype of INI‐1 deficient MM diagnosed through FNA. An accurate diagnosis requires a thorough clinicopathological correlation and a comprehensive IHC panel.

## Linked entities

- **Genes:** SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598], SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598], SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598]
- **Proteins:** CALB2 (calbindin 2), PDPN (podoplanin), SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4), Napsa (napsin A aspartic peptidase), TTF1 (transcription termination factor 1), IL9 (interleukin 9), NUTM1 (NUT midline carcinoma family member 1), WT1 (WT1 transcription factor), SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1)
- **Diseases:** malignant mesothelioma (MONDO:0006292)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** NAPSA (napsin A aspartic peptidase) [NCBI Gene 9476] {aka KAP, Kdap, NAP1, NAPA, NR1H2-AS1, SNAPA}, WT1 (WT1 transcription factor) [NCBI Gene 7490] {aka AWT1, GUD, NPHS4, WAGR, WIT-2, WT-1}, TTF1 (transcription termination factor 1) [NCBI Gene 7270] {aka TTF-1, TTF-I}, IL9 (interleukin 9) [NCBI Gene 3578] {aka HP40, IL-9, P40}, CMPK1 (cytidine/uridine monophosphate kinase 1) [NCBI Gene 51727] {aka CK, CMK, CMPK, UMK, UMP-CMPK, UMPK}, CALB2 (calbindin 2) [NCBI Gene 794] {aka CAB29, CAL2, CR}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598] {aka BAF47, CSS3, INI-1, INI1, MRD15, PPP1R144}, NUTM1 (NUT midline carcinoma family member 1) [NCBI Gene 256646] {aka C15orf55, FAM22H, NUT}
- **Diseases:** fever (MESH:D005334), cough (MESH:D003371), neoplasm (MESH:D009369), INI-1 deficient MM (MESH:D000086002)
- **Chemicals:** Papanicolaou (-), paraffin (MESH:D010232), formalin (MESH:D005557), HE (MESH:D006371), asbestos (MESH:D001194)

## Full text

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## Figures

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12954831/full.md

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Source: https://tomesphere.com/paper/PMC12954831