Three new species of Gnomoniopsis and Ternstroemiomyces (Diaporthales, Sordariomycetes) from China

Abstract
Genes, proteins, chemicals, diseases, species, mutations and cell lines named across the full text — each resolved to its canonical identifier and authoritative record.
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Figure 7| Species | Strains | GenBank accession numbers | References | ||
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| CBS 109747 |
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| CBS 132528* | NA |
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| CBS 114133* |
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| NA |
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| CBS 149.22 |
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| NA |
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| CBS 129351 |
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| ATCC 38755 |
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| CBS 145804* |
| NA |
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| CFCC 52753* |
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| CFCC 52754 |
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| CFCC 52745* |
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| CFCC 52746 |
| NA |
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| CFCC 52743* |
| NA |
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| CFCC 52744 |
| NA |
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| CBS 145803* |
| NA |
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| CFCC 52755* |
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| CFCC 52756 |
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| GZCC 20-0355* |
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| CBS 145802* |
| NA |
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| CFCC 52730 |
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| CFCC 52728* |
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| CFCC 53148* |
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| CFCC 53149 |
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| CFCC 53113* |
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| CFCC 53114 |
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| CBS 145801* |
| NA |
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| CFCC 54038* |
| NA |
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| CFCC 54039 |
| NA |
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| IMI506898* |
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| CFCC 52102* |
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| CFCC 52106* |
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| CFCC 52108 |
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| CFCC 52762* |
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| CFCC 52764 |
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| CFCC 52732* |
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| CFCC 52733 |
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| CFCC 52103* |
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| CFCC 52104 |
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| CFCC 52739* |
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| CFCC 52738 |
| NA |
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| CFCC 57559* |
| NA |
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| CFCC 57560 |
| NA |
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| CFCC 52741* |
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| CFCC 52742 |
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| CFCC 52759* |
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| CFCC 52760 |
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| CFCC 58140* |
| NA |
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| CFCC 58141 |
| NA |
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| CBS 121124 |
| NA |
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| CBS 140348 |
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| CBS 142080* |
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| NA |
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| CBS 142076* |
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| NA |
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| CBS 132183* |
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| CBS 132184* |
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| CBS 143430* |
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| NA |
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| CBS 109755 |
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| NA | |
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| CBS 143163* |
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| NA |
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| A7 |
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| NA |
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| CPC 18819 |
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| NA |
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| CBS 124779* |
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| CBS 142536* |
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| CBS 125680* |
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| CBS 125681 |
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| CGMCC3.28195* |
| NA |
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| SAUCC6333 |
| NA |
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| GCAS5 |
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| CBS 804.79* |
| NA |
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| CFCC 52286* |
| NA |
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| CFCC 52288 |
| NA |
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| CBS 121255 |
| NA |
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| CBS 806.79 |
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| CFCC 54043* |
| NA |
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| CFCC 55517 |
| NA |
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| SAUCC DL0963* |
| NA |
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| SAUCC DL0964 |
| NA |
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| CFCC 54316* |
| NA |
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| CFCC 71563* |
| NA |
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| CFCC 71566 |
| NA |
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| CBS 208.34 |
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| CBS 121226 |
| NA |
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| CGMCC3.28229* |
| NA |
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| SAUCC1260 |
| NA |
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| CFCC 54443* |
| NA |
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| CFCC 54331 |
| NA |
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| MS 0312 |
| NA | NA |
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| CFCC 54376* |
| NA |
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| CFCC 55877 |
| NA |
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| CBS 125672 |
| NA |
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| CBS 125673 |
| NA |
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| CGMCC3.28233* |
| NA |
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| SAUCC2375 |
| NA |
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| SAUCC YN0743* |
| NA |
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| SAUCC YN0742 |
| NA |
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| CBS 121468 |
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| SAUCC MY0293* |
| NA |
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| SAUCC MY0296 |
| NA |
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| CBS 125677 |
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| CBS 125678 |
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| CBS 123202 |
| NA |
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| CBS 121469* |
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| CBS 145085* |
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| NA |
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| GUCC 408.7 |
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| CGMCC3.28192* |
| NA |
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| SAUCC3342 |
| NA |
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| CBS 858.79 |
| NA |
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| CFCC 54304 |
| NA |
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| CFCC 54418* |
| NA |
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| CBS 130190* |
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| CBS 130189 |
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| CGMCC3.28230* |
| NA |
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| SAUCC1033 |
| NA |
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| CBS 904.79 |
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| CGMCC3.25980* |
| NA |
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| CGMCC3.25979 |
| NA |
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| SAUCC YN1659* |
| NA |
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| SAUCC YN1657 |
| NA |
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| CBS 342.97 |
| NA |
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| CPC 14951 |
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| NA |
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| CBS 775.97* |
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| CBS 142544 |
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| NA |
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| CPC 184* |
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| NA |
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| Species | Conidiomata (µm) | Conidial Length (µm) | Conidial Width (µm) | L/W Ratio | Reference |
|---|---|---|---|---|---|
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| 250–450 | (9–) 9.6–11.4 (–12.6) | (2.8–) 3.1–4 (–4.5) | 2.1–4.2 |
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| 100–200 | 4.8–7.5 | 1.7–2.5 | NA |
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| 100–300 | (7.3–) 8–10 (–12.2) | (3.3–) 3.4–3.9 (–4.2) | 1.9–3.3 |
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| 450–550 | 4.2–5.8 | 2.6–3.2 | 1.6–2.2 | This study |
| Species | Conidia (Asexual) (µm) | Ascospores (Sexual) (µm) | Colony characteristics (on PDA) | Growth rate (mm/d) | Reference |
|---|---|---|---|---|---|
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| 10.5–14.5 × 5–7.6 | Not observed | white with moderate mycelia | 8.4–9.1 | This study |
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| Not observed | 11.5–18.1 × 4.8–6.8 | yellowish-white with dense mycelia | 8.7–9.1 | This study |
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| 11–18.5 × 8.2–10.5 | Not observed | gray-white with little mycelia | 2.8–3.3 |
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| 18–22(–25) × 8.7–10 | Not observed | gray-white with moderate mycelia | 4.5–4.8 |
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Taxonomy
TopicsPlant Pathogens and Fungal Diseases · Mycorrhizal Fungi and Plant Interactions · Powdery Mildew Fungal Diseases
Introduction
The Diaporthales (Sordariomycetes, Ascomycota) comprises a widespread fungal group with substantial ecological and economic importance (Senanayake et al. 2017). This order includes well-known phytopathogens such as Cryphonectria parasitica, the causal agent of chestnut blight, as well as numerous species of Diaporthe that are associated with diseases in a wide range of crops (Miller and Lewis Ivey 2025; Zhao et al. 2025). In addition to their roles as pathogens, members of Diaporthales function as saprobes or as endophytes on the various plants in recent years (Gomes et al. 2013; Bai et al. 2023; Li et al. 2025a). Endophytic species colonize healthy plant tissues without inducing visible symptoms and can contribute to plant growth promotion and enhanced resistance (Sun et al. 2019; Pereira et al. 2023). They are also known to produce biologically active secondary metabolites, demonstrating considerable potential for applications in medicine and agriculture (Saravanakumar et al. 2021; Xu et al. 2021; Jiang et al. 2023). Currently, Diaporthales is considered to include 35 families supported by combined morphology and molecular phylogeny (Zhang et al. 2025).
Gnomoniaceae is a distinct family of Diaporthales, and was first established by Winter (1886). This family was circumscribed by Sogonov et al. (2008), and this taxonomic concept has been followed by others. Gnomoniopsis Berl. (Gnomoniaceae) was initially described as a subgenus within Gnomonia Ces. & De Not. because of their similar morphology. However, Gnomoniopsis has been separated from Gnomonia by means of morphology, phylogeny and host associations (Sogonov et al. 2008; Walker et al. 2010). Species of Gnomoniopsis occur as endophytes, saprobes, or pathogens, with some exhibiting a latent pathogenic lifestyle (e.g., G. castaneae) (Dobry and Campbell 2023). They predominantly inhabit families such as Rosaceae, Fagaceae, and Onagraceae. Consequently, investigating their diversity in asymptomatic tissues is vital for understanding their ecological potential and pathogenicity. According to Index Fungorum (http://www.indexfungorum.org/, accessed on 20 Nov. 2025), approximately 50 names have been recorded for Gnomoniopsis.
The family Ternstroemiomycetaceae, currently comprising a single genus Ternstroemiomyces with two species (Te. ternstroemiae and Te. machili), was established based on a leaf-inhabiting fungus isolated from Machilus nanmu (Oliv.) Hemsl. and Ternstroemia gymnanthera (Wight & Arn.) Bedd. Ternstroemiomycetaceae is closely associated with Erythrogloeaceae, forming a distinct clade within a larger branch, yet showing clear divergence. The family is characterized by its pycnidial conidiomata that exude slimy, orange conidial masses, and produces hyaline, multi-guttulate conidia (Zhang et al. 2025). Due to its recent establishment and limited number of known species, the diversity and host range of Ternstroemiomycetaceae remain poorly understood.
Cinnamomum cassia (Lauraceae) is an economically important tree species cultivated for its dried bark, a popular spice and traditional medicinal herb with broad market demand (Cheng et al. 2024). Its pharmacological components have antioxidant, antibacterial and anti-inflammatory effects (Zhang et al. 2019). To date, research on C. cassia has largely focused on its volatile oil composition and pharmacological activities (Zhang et al. 2019), while the diversity of its endophytic fungi remains underexplored (Lv et al. 2024). A comprehensive assessment of endophytic fungal diversity in C. cassia is fundamental to evaluating potential disease risks, exploring beneficial microbial resources, and improving our understanding of plant–microbe interactions.
In this study, several Diaporthales isolates were obtained during a survey of endophytic fungal diversity in C. cassia. Through integrated morphological observations and multilocus phylogenetic analyses based on the internal transcribed spacer (ITS), the large subunit ribosomal RNA gene (LSU), and the translation elongation factor 1-alpha gene (tef1), we identified three new species: Gnomoniopsis luodingensis sp. nov. (Gnomoniaceae), Ternstroemiomyces cinnamomi sp. nov., and Ternstroemiomyces zhaoqingensis sp. nov. (Ternstroemiomycetaceae). This study contributes to the known species diversity of Diaporthales and provides new insights into the ecological role of C. cassia as a fungal host. Furthermore, it establishes an essential taxonomic basis for future research into the biology and host interactions of these novel species.
Materials and methods
Sample collection and fungal strain isolation
In October–November 2022, the healthy leaves of Cinnamomum cassia were collected in Zhaoqing and Luoding, Guangdong Province, and brought to the laboratory on the same day. The leaf samples were stored at 4 °C, and all isolation procedures were completed within 24 h. The procedures used for the surface sterilization of the samples were according to the methods described by Zhou et al. (2022). The samples were sequentially surface-sterilized in 75% ethanol for 30 s, in 2.5% sodium hypochlorite for 4–5 min, and then rinsed three times in sterile distilled water for 30 s. Subsequently, the leaves were cut into 0.5 cm × 0.5 cm pieces using a sterile scalpel. A total of 225 tissue segments were transferred to potato dextrose agar (PDA; containing 200 g/L potato, 20 g/L glucose, and 20 g/L agar) and cultured at 25 °C. Finally, 93 endophytic fungal strains were isolated from these tissue segments.
Morphological and cultural characterization
Agar plugs containing fungal hyphae from the colony margins were transferred to fresh PDA plates for activation, followed by incubation at 25 °C in the dark for 7 days. Morphological characteristics were examined for six isolates. Micromorphological characters from structures produced in culture were observed using a Leica TL3000 Ergo stereomicroscope and Nikon Ci-S microscope. All fungal strains were stored in 10% sterilized glycerin at 4 °C for further studies. Dimensions of microscopic structures, including conidiomata, conidiophores, conidiogenous cells, and conidia, were measured using Digimizer software, with 30 measurements taken for each structure. The plant specimen has been preserved in the herbarium of the Guangxi Medicinal Botanic Garden (GXMG). Additionally, the ex-type living cultures were deposited in the China General Microbiological Culture Collection Center (CGMCC) and Guangxi University of Chinese Medicine (GXCM). The taxonomic information of the new taxa was submitted to Fungal Names (https://nmdc.cn/fungalnames, accessed on 16 Dec. 2025).
DNA extraction, sequencing and phylogenetic analyses
Genomic DNA was extracted from mycelia grown on PDA using a CTAB (cetyltrimethylammonium bromide) method (Guo et al. 2000). The internal transcribed spacer (ITS) region, the large subunit (LSU) rRNA gene, and the translation elongation factor 1-α gene (tef1) were amplified using the following primer pairs: ITS1/ITS4 (White et al. 1990), LROR/LR5 (Vilgalys and Hester 1990), and 983F/2218R (Rehner and Buckley 2005), respectively. Amplification was performed in a 25 µl reaction volume, which contained 1.0 µl DNA template, 1.0 µl of each forward and reverse primer, 12.5 µl 2× Master Mix, and 9.5 µl ddH_2_O. Polymerase chain reaction (PCR) was per formed under the following conditions: initial denaturation at 94 °C for 5 min, followed by 35 cycles of denaturation at 94 °C for 30 sec, annealing at 48 °C (for ITS and LSU) or 54 °C (for tef1) for 50 sec, and extension at 72 °C for 1 min, with a final elongation step at 72 °C for 7 min. The PCR products were then sent to Sangon Biotech (Shanghai, China) Co., Ltd., for sequencing. All sequences were submitted to NCBI’s GenBank (https://www.ncbi.nlm.nih.gov, accessed on 26 Nov. 2025) to obtain the GenBank accession numbers. Attempts were also made to amplify tub2 and rpb2 loci, but no reliable products were obtained despite optimization of PCR conditions.
The quality of our amplified nucleotide sequences was checked and assembled by SeqMan v.7.1.0 and reference sequences were retrieved from the National Center for Biotechnology Information (NCBI). Phylogenetic analyses were conducted using the PhyloSuite v1.2.3 software (Xiang et al. 2023). Initially, sequences were extracted and aligned using MAFFT v7.505 (Katoh and Standley 2013). The resulting alignments were concatenated into a single dataset. The optimal partitioning strategy and evolutionary models were determined using ModelFinder, employing a greedy search algorithm with linked branch lengths based on the Bayesian Information Criterion (BIC). Phylogenetic trees were constructed using both Maximum Likelihood (ML) and Bayesian Inference (BI) methods. The ML phylogeny was inferred using IQ-TREE (Minh et al. 2020). Nodal support was assessed through 10,000 ultrafast bootstrap replicates using an edge-linked partition style. The BI analysis was performed using MrBayes (Huelsenbeck and Ronquist 2001) with two parallel runs and four Markov chains (one cold, three heated). The analysis ran for 1,000,000 generations, with trees sampled every 1,000 generations. Convergence was confirmed when the average standard deviation of split frequencies (ASDOSF) reached 0.005 (<0.01). The first 25% of sampled trees were discarded as burn-in, and the remaining trees were used to calculate Bayesian posterior probabilities (PP). The resulting trees were generated using FigTree v. 1.4.4 (http://tree.bio.ed.ac.uk/software/figtree, accessed on 28 Nov. 2025) or ITOL: Interactive Tree of Life (https://itol.embl.de, accessed on 28 Nov. 2025) (Letunic and Bork 2024), and the final layout of the trees was refined in Adobe Illustrator CC 2019. All GenBank accession numbers in this study are provided in Table 1.
Results
Phylogenetic analyses
Preliminary molecular identification was conducted via a BLASTn search using the ITS sequences. The results revealed that the isolates obtained in this study exhibited the highest sequence similarity to Gnomoniopsis fujianensis, G. rosae, G. smithogilvyi, G. hainanensis, and other closely related taxa. To explicitly verify species boundaries based on the primary fungal barcode, a phylogenetic analysis was performed using the single-locus ITS dataset. The alignment consisted of 58 sequences (including the outgroup Apiognomonia errabunda CBS 109747) and comprised 667 characters (including gaps), of which 151 were parsimony-informative, 48 were variable singleton sites, and 468 were constant. The resulting topology (Fig. 1) clearly distinguished the new isolates as a separate lineage. Specifically, the new species Gnomoniopsis luodingensis formed a well-separated branch with maximum support in the single-locus analysis. Within this clade, strain GXCM RG119 showed a slight branch length variation due to 3 base pair differences (99.5% identity) compared to the GXCM RG106, representing intraspecific variation.
Phylogram of Gnomoniopsis species generated from a Maximum Likelihood analysis based on the ITS sequence dataset. The tree is rooted with Apiognomonia errabunda (CBS 109747). Bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.90 are demonstrated at the branches. Isolates from the present study are indicated in red. Ex-type or ex-holotype strains are indicated in bold black. Some branches are shortened according to the indicated multipliers to fit the page size, and these are indicated by the symbol (//).
Subsequently, to establish a robust evolutionary framework and resolve potential long-branch attraction artifacts observed in preliminary analyses, a concatenated multilocus dataset comprising ITS, LSU, and tef1 sequences was constructed. The final alignment consisted of 58 sequences and 1852 characters (ITS: 1–458; LSU: 459–1329; tef1: 1330–1852), of which 1404 were constant, 76 were variable singleton sites, and 372 were parsimony-informative. The topologies inferred from Maximum Likelihood (ML) and Bayesian Inference (BI) analyses, utilizing the best-fit models K2P+I+G4 for ITS, K2P+I for LSU, and HKY+F+I+G4 for tef1, were congruent with the single-locus results. As shown in Fig. 2, Gnomoniopsis luodingensis formed a distinct, fully supported monophyletic clade. The analysis revealed that the new species is phylogenetically closely related to G. hainanensis, G. fujianensis, and G. fagacearum, yet represents a clearly distinct lineage.
Phylogram of Gnomoniopsis species generated from a Maximum Likelihood analysis based on the combined ITS, LSU, and tef1 sequence dataset. The tree is rooted with Apiognomonia errabunda (CBS 109747). Bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.90 are demonstrated at the branches. Isolates from the present study are indicated in red. Ex-type or ex-holotype strains are indicated in bold black. Some branches are shortened according to the indicated multipliers to fit the page size, and these are indicated by the symbol (//).
Preliminary molecular identification was conducted via a BLASTn search using the ITS sequences. The results revealed that the isolates obtained in this study exhibited the highest sequence similarity to Ternstroemiomyces ternstroemiae and Te. machili (Ternstroemiomycetaceae), as well as taxa within the family Erythrogloeaceae. To explicitly verify species boundaries, a phylogenetic analysis was performed using the single-locus ITS dataset. The alignment consisted of 69 sequences, with Diaporthella corylina (CBS 121124) and Diaporthella cryptica (CBS 140348) selected as the outgroup. The resulting topology clearly (Fig. 3) distinguished the new isolates as distinct lineages.
Phylogram of Ternstroemiomyces species generated from a Maximum Likelihood analysis based on the ITS sequence dataset. The tree is rooted with Diaporthella corylina (CBS 121124) and Diaporthella cryptica (CBS 140348). Bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.90 are demonstrated at the branches. Isolates from the present study are indicated in red. Ex-type or ex-holotype strains are indicated in bold black. Some branches are shortened according to the indicated multipliers to fit the page size, and these are indicated by the symbol (//).
Subsequently, to establish a robust evolutionary framework, a concatenated multilocus dataset comprising ITS, LSU, and tef1 sequences was constructed. The final alignment consisted of 70 sequences and 1584 characters (ITS: 1–434; LSU: 435–1250; tef1: 1251–1584), of which 1119 were constant, 95 were variable singleton sites, and 370 were parsimony-informative. The topologies inferred from Maximum Likelihood (ML) and Bayesian Inference (BI) analyses, utilizing the best-fit models TIM3e+I+G4 for ITS and tef1, and GTR+F+I+G4 for LSU, were congruent with the single-locus results. As shown in Fig. 4, the phylogenetic analysis revealed that the isolates represent two distinct novel species, herein described as Ternstroemiomyces cinnamomi and Ternstroemiomyces zhaoqingensis. Both species formed independent, fully supported monophyletic clades. Notably, the two new species clustered together with strong support and formed a sister group to the clade containing Te. ternstroemiae and Te. machili.
Phylogram of Ternstroemiomyces species generated from a Maximum Likelihood analysis based on the combined ITS, LSU, and tef1 sequence dataset. The tree is rooted with Diaporthella corylina (CBS 121124) and Diaporthella cryptica (CBS 140348). Bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.90 are demonstrated at the branches. Isolates from the present study are indicated in red. Ex-type or ex-holotype strains are indicated in bold black. Some branches are shortened according to the indicated multipliers to fit the page size, and these are indicated by the symbol (//).
Taxonomy
Gnomoniopsis
luodingensis
Taxon classificationFungiDiaporthalesGnomoniaceae
Z.H. Guo & X.M. Tan sp. nov.
89ABC40C-4787-5F50-B468-F6FB50B8B4F6
Fungal Names: FN 573162
Holotype.
China • Guangdong Province, Luoding City, on leaves of Cinnamomum cassia (Lauraceae), 22°57'90"N, 111°69'98"E, 353.2 m asl., November. 2022, X.M. Tan, holotype GXMG 20221110-1, ex-type living culture GXCM RG106 = CGMCC 3.29462.
Gnomoniopsis luodingensis (CGMCC 3.29462). A, B. Inverse and reverse sides of colony after seven days on PDA; C, D. Conidiomata forming on PDA; E, F. Conidiophores and conidiogenous cells with developing conidia; G–I. Conidia. Scale bars: 500 µm (C, D); 10 µm (E–I).
Etymology.
Named after the collection site of the type specimen, Luoding City.
Description.
Endophytic in leaves of Cinnamomum cassia. Colonies on PDA at 25 °C in darkness, attaining 67–70 mm diam. after seven days, with moderate aerial mycelia, grey in the center, white at the edge, and light yellow in reverse. Asexual morph: Conidiomata pycnidial 450–550 μm, half-buried in the culture medium, black, scattered, globose to subglobose, exuding conidia droplets from central ostioles in dark at 25 °C. Conidiophores 18–22 × 1.3–2.6 μm, slender and rod-shaped, radiating slightly outward from the base, smooth, swollen apex. Conidiogenous cells 4–5.5 × 2.5–3 μm, brown, smooth, cylindrical to ampulliform, attenuate towards apex, phialidic. Conidia 4.2–5.8 × 2.6–3.2 µm, formed singly, oblong to ellipsoid, brown, smooth, thin-walled, apex obtuse, with an inconspicuous base. Sexual morph was not observed.
Notes.
Phylogenetic analysis based on the combined dataset showed that Gnomoniopsis luodingensis formed a distinct and fully supported lineage (BP/PP: 100/1). It appeared as the sister species to G. hainanensis with high bootstrap support (BP: 92%), and together they clustered with G. fujianensis and G. fagacearum in a well-supported clade (BP/PP: 95/0.9). G. luodingensis (CGMCC 3.29462) was distinguished from Gnomoniopsis hainanensis (CFCC 54376), G. fujianensis (CGMCC3.28229), and G. fagacearum (CFCC 54316) by 28/494, 27/548, 29/496 pair differences in ITS sequences. G. luodingensis is different from the phylogenetically close species G. hainanensis by its conidial size and length-width ratio (4.2–5.8 × 2.6–3.2 µm, L/W = 1.6–2.2 in G. luodingensis vs. 7.3–12.2 × 3.3–4.2 µm, L/W = 1.9–3.3 in G. hainanensis). A synopsis of morphological characteristics compared with other closely related species is presented in Table 2. Therefore, we introduce this taxon as a new species.
Table 2.: Synopsis of morphological characteristics of Gnomoniopsis luodingensis compared with closely related species.
Ternstroemiomyces
cinnamomi
Taxon classificationFungiDiaporthalesTernstroemiomycetaceae
Z.H. Guo & X.M. Tan sp. nov.
76D1A86B-0178-5247-B9DE-2BBB7E6AA9CD
Fungal Names: FN 573163
Holotype.
China • Guangdong Province, Zhaoqing City, on leaves of Cinnamomum cassia (Lauraceae), 23°13'97"N, 112°04'48"E, 57.3 m asl., October. 2022, X.M. Tan, holotype GXMG 20221025-1, ex-type living culture GXCM RG130 = CGMCC 3.29461.
Ternstroemiomyces cinnamomi (CGMCC 3.29461). A, B. Inverse and reverse sides of colony after seven days on PDA; C, D. Conidiomata forming on PDA; E, F. Conidiophores and conidiogenous cells with developing conidia; G, H. Conidia. Scale bars: 500 µm (C, D); 10 µm (E–H).
Etymology.
The epithet “cinnamomi” refers to the generic name of the host plant Cinnamomum cassia.
Description.
Endophytic in leaves of Cinnamomum cassia. Colonies on PDA at 25 °C in darkness, attaining 59–64 mm diam. after seven days, colonies spreading out like petals, white with moderate mycelia, undulate margin, and circular outward extension, reverse similar in color. Asexual morph: Conidiomata pycnidial, 350–500 µm, buried or attached to mycelia, brown (later turning black), aggregated or solitary, erumpent, exuding hyaline conidia. Conidiophores indistinct, often reduced. Conidiogenous cells 8.5–10 × 3.5–5.5 µm, hyaline, cylindrical to ampulliform, attenuate towards the apex, exhibiting a transparent appearance with a narrowed phialidic neck. Conidia 10.5–14.5 × 5–7.6 µm, pale brown, smooth, multi-guttulate, range from oblong to ellipsoid, base truncate, with a truncate base and a conspicuous hilum measuring 1–1.8 µm. Sexual morph was not observed.
Notes.
Phylogenetic analysis (Fig. 4) based on the combined dataset showed that Ternstroemiomyces cinnamomi formed a distinct and fully supported lineage (BP/PP: 100/1). It appeared as the sister lineage to the clade comprising Te. zhaoqingensis, Te. machili and Te. ternstroemiae, and together they clustered in a well-supported clade (BP/PP: 98/1). Te. cinnamomi (CGMCC 3.29461) was distinguished from Te. zhaoqingensis (CGMCC 3.29460) by 51/574, 8/875, and 22/971 base pairs differences in ITS, LSU, and tef1 sequences, from Te. ternstroemiae (CGMCC 3.28237) by 39/549 and 4/843 base pair, from Te. machili (CGMCC 3.28263) by 43/551 and 6/840 base pair differences in ITS and LSU sequences, respectively. Morphologically, Te. zhaoqingensis lacks an asexual sporulation description, making it impossible to compare microscopic structures with Te. cinnamomi. However, their macroscopic colony colors differ greatly: on PDA, Te. cinnamomi is uniform white while Te. zhaoqingensis is yellowish-white at the center with white edges. Morphologically, since Te. zhaoqingensis only had a description of sexual morphology, it could not be directly compared with the asexual morphology in this study. Then, Te. ternstroemiae and Te. machili (Zhang et al. 2025), which were closely related on the evolutionary tree, were selected for comparison. A synopsis of morphological characteristics of Te. cinnamomi compared with these closely related species is presented in Table 3. The conidia of Te. cinnamomi (10.5–14.5 × 5–7.6 µm) were smaller than Te. ternstroemiae (18–22(–25) × 8.7–10 µm), and Te. machili (11–18.5 × 8.2–10.5 µm). The new isolates were described here as Ternstroemiomyces cinnamomi sp. nov., based on their distinct morphological characteristics and phylogenetic analysis.
Table 3.: Synopsis of morphological and cultural characteristics of Te. zhaoqingensis and Te. cinnamomi compared with closely related species.
Ternstroemiomyces
zhaoqingensis
Taxon classificationFungiDiaporthalesTernstroemiomycetaceae
Z.H. Guo & X.M. Tan sp. nov.
07B8B23F-EF73-58EC-975C-11AFAA6BAFCE
Fungal Names: FN 573164
Holotype.
China • Guangdong Province, Zhaoqing City, on leaves of Cinnamomum cassia (Lauraceae), 23°13'97" N, 112°04'48" E, 57.3 m asl., October. 2022, X.M. Tan, holotype GXMG 20221025-2, ex-type living culture GXCM RG79 = CGMCC 3.29460.
Ternstroemiomyces zhaoqingensis (CGMCC 3.29460). A, B. Inverse and reverse sides of colony after seven days on PDA; C, D. Ascomata forming on PDA; E, F. Asci; G, H. The germinating ascospore; I–M. Ascospore. Scale bars: 200 µm (C, D); 20 µm (E); 10 µm (F–M).
Etymology.
Named after the collection site of the type specimen, Zhaoqing City.
Description.
Endophytic in leaves of Cinnamomum cassia. Colonies on PDA at 25 °C in darkness, attaining 61–64 mm diam. after seven days, colonies spreading out like petals, yellowish-white with dense mycelia, undulate margin and circular outward extension, reverse similar in color. Sexual morph: Ascomata 200–350 µm, buried or attached to the surface of mycelia, aggregative or solitary, globose to elliptical, brown, exuding hyaline asci. Asci 66.1–89.7 × 5.2–10.3 µm, unitunicate, 8-spored, subcylindrical to long obovoid, wedge-shaped. Ascospores 11.5–18.1 × 4.8–6.8 µm, long-ellipsoidal to sub-lageniform, sharpening to apex, hyaline, median 1-septate. Asexual morph not observed.
Notes.
Phylogenetic analysis based on the combined dataset showed that Ternstroemiomyces zhaoqingensis formed a distinct and fully supported lineage (BP/PP: 100/1). It appeared as the sister lineage to Te. machili and Te. ternstroemiae with high support (BP/PP: 99/1), and together they clustered with Te. cinnamomi in a well-supported clade (BP/PP: 98/1) (Fig. 2). Te. zhaoqingensis was distinguished from Te. ternstroemiae (CGMCC 3.28237) by 21/549, and 7/843 base pair, from Te. machili (CGMCC 3.28263) by 28/550, and 9/840 base pair differences in ITS and LSU, sequences, respectively. Morphologically, Te. zhaoqingensis did not produce asexual sporulation under the conditions examined, which precluded direct comparison of microscopic structures with Te. ternstroemiae and Te. machili. A synopsis of morphological and cultural characteristics is presented in Table 3. Nevertheless, the three species showed differences in their cultural characteristics on PDA. Although colony growth rate is generally regarded as a supplementary character, Te. zhaoqingensis (8.7–9.1 mm/d) exhibited a noticeably faster growth rate than Te. ternstroemiae (4.5–4.8 mm/d) and Te. machili (2.8–3.3 mm/d) when cultured under identical conditions. In addition, differences were observed in colony morphology: colonies of Te. zhaoqingensis were dense and cottony, white with a yellowish-white center. In contrast, colonies of Te. machili appeared gray-white with relatively sparse mycelia, while those of Te. ternstroemiae showed white to grayish aerial mycelium. Taken together, these macroscopic characteristics provide supportive, though not definitive, phenotypic evidence that is consistent with the phylogenetic separation of Te. zhaoqingensis. The new isolates are therefore described here as Ternstroemiomyces zhaoqingensis sp. nov., based on the combined evidence from cultural characteristics and phylogenetic analyses.
Discussion
The taxonomic system of the order Diaporthales has undergone a profound paradigm shift: its early framework was exclusively based on the morphological characteristics of the teleomorph (Barr 1978), yet the limitations of this approach prompted a gradual transition toward a more integrative paradigm. Early morphology-based systems were often insufficient due to extensive morphological convergence and plasticity among taxa. This transformation has been driven by molecular phylogenetics, which, through the incorporation of multi-gene sequence data such as ITS, LSU, rpb2, and tef1, together with the integration of teleomorph and anamorph characteristics with molecular evidence, has successfully resolved numerous long-standing taxonomic ambiguities (Castlebury et al. 2002; Hyde et al. 2020). As demonstrated in recent taxonomic work, this integrated approach has successfully established a well-resolved classification system comprising 35 families (Zhang et al. 2025). The present study follows this integrative taxonomic framework. This study reports the first isolation and identification of three endophytic fungi belonging to the order Diaporthales from healthy leaves of Cinnamomum cassia. They are described as Gnomoniopsis luodingensis sp. nov., Ternstroemiomyces cinnamomi sp. nov., and Ternstroemiomyces zhaoqingensis sp. nov. Their taxonomic placement was inferred based on a combination of morphological observations and multilocus phylogenetic analyses (ITS, LSU, tef1), although some limitations in character comparability and locus coverage should be acknowledged.
In the phylogenetic analysis of Gnomoniopsis, LSU sequences were unavailable for three taxa (G. hainanensis, G. fujianensis, and G. fagacearum), and the tef1 sequence of the sister lineage (G. hainanensis) was relatively short, preventing reliable base-by-base comparisons. Notably, single-locus analysis based on ITS placed G. luodingensis on a long branch, appearing as sister to the clade containing G. hainanensis, G. fujianensis, and G. fagacearum, but did not clearly resolve its specific relationship with G. hainanensis. We considered the possibility of phylogenetic artifacts, such as long-branch attraction (LBA), which may result from rate heterogeneity or limited phylogenetic signal in a single locus. In contrast, the concatenated multi-locus phylogeny provided improved resolution, recovering G. luodingensis as the sister species to G. hainanensis with strong support (BP: 92). These results indicate that the multi-locus dataset contributed to resolving the topological uncertainty observed in the single-locus analysis and provided additional evidence for the delimitation of the new species. Morphologically, G. luodingensis conforms well to the generic description of Gnomoniopsis (Walker et al. 2010). It is characterized by globose conidiomata that are buried in or attached to mycelia, and conidia that are oblong to ellipsoid, smooth, aseptate, and guttulate.
According to previous studies, species of Gnomoniopsis are significant pathogens of agricultural and forestry crops, including trees, flowers, and fruit, often causing severe plant damage that leads to substantial economic losses (Miller and Lewis Ivey 2025). Species of Gnomoniopsis have been primarily reported on hosts within the Rosaceae, Fagaceae, and Onagraceae families (Guan et al. 2024; Li et al. 2025b). Recent research has extended this range to several other families, as documented by the discoveries of G. annonae on Annona montana (Annonaceae), G. euryae on Eurya nitida (Theaceae), G. juglandis on Juglans regia (Juglandaceae), G. lanceolata on Phoebe lanceolata (Lauraceae), and G. melastomatis on Melastoma candidum (Melastomataceae) (Zhang et al. 2025). These findings indicate that the host range of Gnomoniopsis is broader than previously assumed. Importantly, our study further expands the known host spectrum of Gnomoniopsis by reporting its presence on Cinnamomum cassia (Lauraceae). This finding explicitly extends the host range of the genus to include the laurel family, corroborating and adding a new host record to the earlier report of G. lanceolata on another lauraceous plant, Phoebe lanceolata (Zhang et al. 2025).
According to the latest classification by Zhang et al. (2025), the newly described family Ternstroemiomycetaceae is closely allied with Erythrogloeaceae, together forming a separate clade in a larger phylogenetic grouping (a relationship also supported by our Fig. 4). A similar issue regarding data availability was observed in the phylogenetic analysis of Ternstroemiomyces. The tef1 sequences for the sister taxa, Te. machili and Te. ternstroemiae, were relatively short, preventing reliable base-by-base comparisons and limiting resolution within this subclade. We considered the possibility that the distinct positions of the new species could result from long-branch attraction (LBA) due to these data limitations. Nevertheless, both single-locus (ITS) and concatenated multi-locus phylogenies consistently recovered Te. cinnamomi and Te. zhaoqingensis as separate lineages. In the multi-locus analysis, they formed well-supported clades (BP/PP = 99/1), each sisters to Te. machili and Te. ternstroemiae, respectively. This concordance across different datasets, despite partial sequence incompleteness in sister taxa, provides additional evidence that the new species represent genetically distinct lineages rather than artifacts of phylogenetic reconstruction.
Morphologically, the sexual morph of Ternstroemiomyces cinnamomi is distinct from other families in Diaporthales. It differs from Harknessiaceae and Schizoparmaceae primarily in having consistently 1-septate ascospores, whereas ascospores in these two families are typically aseptate (Senanayake et al. 2017). In addition, the sub-lageniform ascospores with apically attenuated ends further distinguish Te. cinnamomi from the predominantly ellipsoidal ascospores observed in Schizoparmaceae. With respect to Erythrogloeaceae (Senanayake et al. 2017), the sexual morph characters are poorly defined or remain undocumented for most representative taxa, rendering a reliable morphological comparison currently unfeasible. Nevertheless, multigene phylogenetic analyses place Te. cinnamomi unambiguously within Ternstroemiomycetaceae, supporting its taxonomic independence from these morphologically comparable families.
During an investigation of endophytic fungi associated with C. cassia, three novel taxa were identified from healthy leaf tissues. These results highlight the still-underexplored diversity of endophytic Diaporthales associated with Lauraceae. Ecologically, the recovery of these taxa as endophytes suggests that they may be involved in host–fungus interactions; however, their specific ecological roles remain unclear. Endophytic fungi are known to exhibit a broad spectrum of lifestyles, ranging from mutualism to latent pathogenicity, and may influence host physiology under certain conditions. Previous studies have demonstrated that some functional endophytes can enhance host stress tolerance and secondary metabolite accumulation through molecular regulation. For example, endophytic fungi associated with Fagopyrum tataricum have been shown to upregulate key biosynthetic genes (e.g., C4H, CHS, and CHI) and photosynthetic pathways, thereby improving flavonoid production and drought resistance (Jia et al. 2025). However, such ecological roles remain speculative in the absence of experimental or functional evidence. This study underscores the unique resources of endophytic fungi in economically important trees. Future research integrating functional assays, pathogenicity tests, and omics-based approaches will be necessary to clarify the ecological roles and applied potential of these taxa.
Supplementary Material
XML Treatment for Gnomoniopsis luodingensis
XML Treatment for Ternstroemiomyces cinnamomi
XML Treatment for Ternstroemiomyces zhaoqingensis
The reference list from the paper itself. Each links out to its DOI / PubMed record.
- 1Bai Y, Lin L, Pan M, Fan X (2023) Studies of Diaporthe (Diaporthaceae, Diaporthales) species associated with plant cankers in Beijing, China, with three new species described. Myco Keys 98: 59–86. 10.3897/mycokeys.98.104156 PMC 1024252637287769 · doi ↗ · pubmed ↗
- 2Barr ME (1978) The Diaporthales in North America with emphasis on Gnomonia and its segregates. Mycologia Memoirs 7: 1–232.
- 3Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94(6): 1017–1031. 10.1080/15572536.2003.1183315721156573 · doi ↗ · pubmed ↗
- 4Cheewangkoon R, Groenewald JZ, Summerell BA, Hyde KD, To-Anun C, Crous PW (2009) Myrtaceae, a cache of fungal biodiversity. Persoonia 23: 55–85. 10.3767/003158509 X 474752 PMC 280273120198162 · doi ↗ · pubmed ↗
- 5Chen Q, Bakhshi M, Balci Y, Broders KD, Cheewangkoon R, Chen SF, Fan XL, Gramaje D, Halleen F, Horta Jung M, Jiang N, Jung T, Májek T, Marincowitz S, Milenković I, Mostert L, Nakashima C, Nurul Faziha I, Pan M, Raza M, Scanu B, Spies CFJ, Suhaizan L, Suzuki H, Tian CM, Tomšovský M, Úrbez-Torres JR, Wang W, Wingfield BD, Wingfield MJ, Yang Q, Yang X, Zare R, Zhao P, Groenewald JZ, Cai L, Crous PW (2022) Genera of phytopathogenic fungi: GOPHY 4. Studies in Mycology 101: 417–564. 10.3114/sim.2022.1 · doi ↗ · pubmed ↗
- 6Cheng Y, Fu Y, Gu D, Huang Y, Lu Y, Liu Y, Li X, Yao X, Zhang X, Jian W, Liu P, Wu H, Li Y (2024) Seasonal variation in chemical composition and antioxidant and antibacterial activity of essential oil from Cinnamomum cassia leaves. Plants 14(1): 81. 10.3390/plants 14010081 PMC 1172302939795342 · doi ↗ · pubmed ↗
- 7Crous PW, Summerell BA, Alfenas AC, Edwards J, Pascoe IG, Porter IJ, Groenewald JZ (2012 a) Genera of diaporthalean coelomycetes associated with leaf spots of tree hosts. Persoonia 28: 66–75. 10.3767/003158512 X 642030 PMC 340941623105154 · doi ↗ · pubmed ↗
- 8Crous PW, Summerell BA, Shivas RG, Carnegie AJ, Groenewald JZ (2012 b) A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov. Persoonia 28: 49–65. 10.3767/003158512 X 639791 PMC 340941523105153 · doi ↗ · pubmed ↗
