# Identification of a Novel, Oncogenic and Targetable TPR::ABL2 Fusion Gene in T‐Cell Acute Lymphoblastic Leukaemia

**Authors:** Elias Lagonik, Elyse. C. Page, Laura N. Eadie, Caitlin E. Schutz, Jacqueline A. Rehn, Susan L. Heatley, Andrew S. Moore, Muirin Healy, Morag Whyte, Timothy P. Hughes, David T. Yeung, Deborah L. White

PMC · DOI: 10.1002/jha2.70255 · EJHaem · 2026-03-02

## TL;DR

A new TPR::ABL2 fusion gene was found in a high-risk T-cell leukemia case and shown to be treatable with existing drugs.

## Contribution

Discovery of a novel TPR::ABL2 fusion gene in T-ALL and its targetability with tyrosine kinase inhibitors.

## Key findings

- TPR::ABL2 fusion promotes cytokine-independent growth in Ba/F3 cells, showing its oncogenic potential.
- TPR::ABL2 exhibits kinase activation and is sensitive to tyrosine kinase inhibitors in both patient and cell models.
- The study expands the known ABL2 fusion repertoire in ALL and suggests TKIs as a treatment option.

## Abstract

ABL2 rearrangements represent a subtype of acute lymphoblastic leukaemia (ALL) associated with poor prognosis and survival. This study reports a high‐risk T‐cell ALL (T‐ALL) case with a novel TPR::ABL2 gene fusion resulting from a chromosomal deletion. Overexpression of TPR::ABL2 in Ba/F3 cells promoted cytokine‐independent growth, demonstrating its oncogenic nature. Both primary patient and Ba/F3 cells carrying TPR::ABL2 exhibited kinase activation and sensitivity to tyrosine kinase inhibitors (TKIs). This study expands the repertoire of ABL2 fusions identified in ALL and supports the incorporation of TKIs into T‐ALL treatment regimens to improve outcomes for this subtype.

## Linked entities

- **Genes:** ABL2 (ABL proto-oncogene 2, non-receptor tyrosine kinase) [NCBI Gene 27]
- **Diseases:** T-cell acute lymphoblastic leukaemia (MONDO:0004963), T-ALL (MONDO:0004963)

## Full-text entities

- **Genes:** Tpr (translocated promoter region, nuclear basket protein) [NCBI Gene 108989] {aka 2610029M07Rik}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, LEF1 (lymphoid enhancer binding factor 1) [NCBI Gene 51176] {aka ECTD1, ECTD17, LEF-1, TCF10, TCF1ALPHA, TCF7L3}, Sh3 (sperm hammerhead 3) [NCBI Gene 100125849], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, TLX3 (T cell leukemia homeobox 3) [NCBI Gene 30012] {aka HOX11L2, RNX}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, CD34 (CD34 molecule) [NCBI Gene 947], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, ANPEP (alanyl aminopeptidase, membrane) [NCBI Gene 290] {aka AP-M, AP-N, APN, CD13, GP150, LAP1}, Crkl (Crk like proto-oncogene, adaptor protein) [NCBI Gene 12929] {aka 1110025F07Rik, Crkol, snoop}, Stat5a (signal transducer and activator of transcription 5A) [NCBI Gene 20850] {aka STAT5}, Nup214 (nucleoporin 214) [NCBI Gene 227720] {aka CAN, D2H9S46E}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, CD7 (CD7 molecule) [NCBI Gene 924] {aka GP40, LEU-9, TP41, Tp40}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, CRKL (CRK like proto-oncogene, adaptor protein) [NCBI Gene 1399], TPR (translocated promoter region, nuclear basket protein) [NCBI Gene 7175] {aka MRT79}, ABL2 (ABL proto-oncogene 2, non-receptor tyrosine kinase) [NCBI Gene 27] {aka ABLL, ARG}, Abl2 (ABL proto-oncogene 2, non-receptor tyrosine kinase) [NCBI Gene 11352] {aka Abll, Arg}, Nup98 (nucleoporin 98) [NCBI Gene 269966] {aka 4732457F17, Nup96}, Il3 (interleukin 3) [NCBI Gene 16187] {aka BPA, Csfmu, HCGF, Il-3, MCGF, PSF}, CD33 (CD33 molecule) [NCBI Gene 945] {aka CD33rSiglec, SIGLEC-3, SIGLEC3, p67}, FBXW7 (F-box and WD repeat domain containing 7) [NCBI Gene 55294] {aka AGO, CDC4, DEDHIL, FBW6, FBW7, FBX30}
- **Diseases:** graft-versus-host disease (MESH:D006086), Cancer (MESH:D009369), hepatosplenomegaly (MESH:C535727), gastrointestinal symptoms (MESH:D012817), fever (MESH:D005334), gastric carcinoma (MESH:D013274), lymphadenopathy (MESH:D008206), leukocytosis (MESH:D007964), B-cell and T-cell ALL (MESH:D015456), lethargy (MESH:D053609), ALL (MESH:D054218), ascites (MESH:D001201)
- **Chemicals:** Asciminib (MESH:C000621806), idarubicin (MESH:D015255), ponatinib (MESH:C545373), cyclophosphamide (MESH:D003520), ruxolitinib (MESH:C540383), thiotepa (MESH:D013852), imatinib (MESH:D000068877), fludarabine (MESH:C024352), nelarabine (MESH:C104457), dasatinib (MESH:D000069439), AALL0434 (-), DMSO (MESH:D004121), cytarabine (MESH:D003561), ATP (MESH:D000255)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.R465C
- **Cell lines:** Ba/F3 — Mus musculus (Mouse), Factor-dependent cell line (CVCL_0161)

## Full text

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## Figures

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## References

15 references — full list in the complete paper: https://tomesphere.com/paper/PMC12954347/full.md

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Source: https://tomesphere.com/paper/PMC12954347