# Three naphthomycin type polyketide compounds isolated from strain Streptomyces sp. HKIB0008

**Authors:** Yuan Chen, Fei Zhang, Zi-Kang Zhao, Lin-Fang Tang, Yu-Xin Sun, Mi-Mi Tian, Xing-Tao Li, Qian Zhao, Xiao-Jiang Hao, Mingming Cao, Duozhi Chen

PMC · DOI: 10.1007/s13659-026-00591-6 · Natural Products and Bioprospecting · 2026-03-03

## TL;DR

Three new naphthomycin compounds were isolated from a Streptomyces strain and their structures and antimicrobial properties were studied.

## Contribution

The discovery of three new naphthomycin derivatives with unique structural features and antimicrobial activity.

## Key findings

- Three new naphthomycin derivatives (R, S, T) were isolated and structurally characterized.
- Compound R has a novel structural feature due to carbon–carbon bond cleavage and Baeyer–Villiger oxidation.
- Minimum inhibitory concentration assays were performed to assess antimicrobial activity.

## Abstract

Three new naphthomycin derivatives were isolated and identified from Streptomyces sp. HKIB0008, and were designated as naphthomycin R (1), naphthomycin S (2), and naphthomycin T (3). Their structures were elucidated using a combination of spectroscopic techniques, including high-resolution mass spectrometry, and NMR. The naphthoquinone core of 1 underwent carbon–carbon bond cleavage, resulting in a novel structural feature, and a corresponding Baeyer–Villiger oxidation mechanism was proposed. Compounds 2 and 3 possess a complex side chain when compared to known cystine modification on the naphthalenoid core as in the case of naphthomycins I and J. In addition, the minimum inhibitory concentration (MIC) assays for these compounds were conducted.

The online version contains supplementary material available at 10.1007/s13659-026-00591-6.

## Full-text entities

- **Genes:** IFA38 (ketoreductase) [NCBI Gene 852456]
- **Diseases:** tumor (MESH:D009369), cytotoxic (MESH:D064420), CS (MESH:D006223)
- **Chemicals:** 13C (MESH:C000615229), H-16 (MESH:C022870), polyketide (MESH:D061065), KBr (MESH:C039004), amide (MESH:D000577), water (MESH:D014867), benzene (MESH:D001554), C (MESH:D002244), CH3CN (MESH:C032159), esters (MESH:D004952), ketone (MESH:D007659), agar (MESH:D000362), nitrogen (MESH:D009584), carboxylic acid (MESH:D002264), Ansamycins (MESH:D047029), Dichloromethane (MESH:D008752), E2 (MESH:D004958), CIL (MESH:D011345), 3H (MESH:D014316), CH3OH (MESH:D000432), NaCl (MESH:D012965), H-3 (MESH:C012616), naphthomycin J (MESH:C115623), C-1 (MESH:C400149), glucose (MESH:D005947), DMSO (MESH:D004121), H (MESH:D006859), acetate (MESH:D000085), naphthomycin (MESH:C010252), chloroform (MESH:D002725), lactone (MESH:D007783), cysteine (MESH:D003545), polyene (MESH:D011090), CS (MESH:D002586), acetone (MESH:D000096), propionate (MESH:D011422), 3-amino-5-hydroxybenzoic acid (MESH:C031509), cystine (MESH:D003553), glycerol (MESH:D005990), silica (MESH:D012822), Sephadex LH-20 (MESH:C025614), H-9 (MESH:C044388), H-7 (MESH:D019307), naphthoquinone (MESH:D009285), ethyl acetate (MESH:C007650), H-6 (MESH:C003027), H-14 (-), 2H (MESH:D003903), Naphthomycin I (MESH:C115622)
- **Species:** Amycolatopsis sp. (species) [taxon 37632], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Magnolia hookeri (species) [taxon 573530], Escherichia coli (E. coli, species) [taxon 562], Bacillus subtilis (species) [taxon 1423], Micromonospora sp. (species) [taxon 1876], Salinispora sp. (species) [taxon 1979206], Streptomyces sp. (species) [taxon 1931], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], uncultured actinomycete (species) [taxon 100235]
- **Cell lines:** HKIB0008 — Homo sapiens (Human), Nephropathic cystinosis, Finite cell line (CVCL_W227)

## Full text

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Source: https://tomesphere.com/paper/PMC12953843