# Zinc finger proteins (ZFPs) in health and disease

**Authors:** Zhenxin Zhao, Kairan Huang, Zi Liao, Bei Chen, Jing Chen, Zhigang Mei

PMC · DOI: 10.1186/s43556-026-00413-8 · Molecular Biomedicine · 2026-03-03

## TL;DR

This review explores how zinc finger proteins regulate gene expression and contribute to diseases like stroke, and evaluates new strategies to target them for therapy.

## Contribution

The paper introduces a comprehensive framework for targeting zinc finger proteins across multiple diseases, emphasizing ischemic stroke as a model.

## Key findings

- Zinc finger proteins regulate key stroke risk factors like hypertension and atherosclerosis.
- Dysregulated ZFP activity contributes to post-ischemic injury through neuroinflammation and cell death.
- Emerging therapies like PROTACs and ZFN-based gene editing offer promising ways to modulate ZFP function.

## Abstract

Zinc finger proteins (ZFPs), a vast superfamily of sequence-specific DNA and RNA-binding proteins, serve as master regulators of gene expression and cellular homeostasis. While traditionally studied for their roles in development, ZFPs have emerged as critical effectors and therapeutic targets across a wide spectrum of human pathologies, including cancer, neurological disorders, and autoimmune diseases. This review systematically dissects the molecular mechanisms by which dysregulated ZFP activity drives disease pathogenesis, using ischemic stroke as a central exemplar to illustrate their multifaceted roles. We detail how specific ZFPs orchestrate key stroke risk factors such as hypertension, hyperglycemia, and atherosclerosis, subsequently govern post-ischemic injury cascades, including neuroinflammation, programmed cell death, and blood–brain barrier disruption. Addressing the long-standing challenge of ZFPs as “undruggable” targets, we critically evaluate cutting-edge therapeutic strategies poised to modulate their function with precision. These include small-molecule modulators, targeted protein degraders (PROTACs), zinc finger nuclease (ZFN)-based gene editing, and advanced nanocarrier delivery systems, complemented by high-throughput computational screening. By integrating deep mechanistic insights with novel translational approaches, this review establishes a pioneering pan-disease framework for targeting ZFP networks. We provide a structured roadmap for future research and highlight the immense potential of ZFPs as a new class of master regulatory targets for developing novel and feasible therapies in ischemic stroke and beyond.

## Linked entities

- **Diseases:** cancer (MONDO:0004992), ischemic stroke (MONDO:1060198), hyperglycemia (MONDO:0002909), atherosclerosis (MONDO:0005311)

## Full-text entities

- **Genes:** MAZ (MYC associated zinc finger protein) [NCBI Gene 4150] {aka PUR1, Pur-1, SAF-1, SAF-2, SAF-3, ZF87}, LILRB1 (leukocyte immunoglobulin like receptor B1) [NCBI Gene 10859] {aka CD85J, ILT-2, ILT2, LIR-1, LIR1, MIR-7}, XRCC6 (X-ray repair cross complementing 6) [NCBI Gene 2547] {aka CTC75, CTCBF, G22P1, KU70, ML8, TLAA}, GATA1 (GATA binding protein 1) [NCBI Gene 2623] {aka CNSHA9, ERYF1, GATA-1, GF-1, GF1, HAEADA}, CCNK (cyclin K) [NCBI Gene 8812] {aka CPR4, IDDHDF}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, TAF1 (TATA-box binding protein associated factor 1) [NCBI Gene 6872] {aka BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, Snord115 [NCBI Gene 692218], TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, SUFU (SUFU negative regulator of hedgehog signaling) [NCBI Gene 51684] {aka BCNS2, JBTS32, PRO1280, SUFUH, SUFUXL}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, GSPT1 (G1 to S phase transition 1) [NCBI Gene 2935] {aka 551G9.2, ETF3A, GST1, eRF3a}, ZCCHC8 (zinc finger CCHC-type containing 8) [NCBI Gene 55596] {aka PFBMFT5}, SPRY2 (sprouty RTK signaling antagonist 2) [NCBI Gene 10253] {aka IGAN3, hSPRY2}, SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, EXO1 (exonuclease 1) [NCBI Gene 9156] {aka HEX1, hExoI}, TNFSF9 (TNF superfamily member 9) [NCBI Gene 8744] {aka 4-1BB-L, CD137L, TNLG5A}, HK2 (hexokinase 2) [NCBI Gene 3099] {aka HKII, HXK2}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, CTCF (CCCTC-binding factor) [NCBI Gene 10664] {aka CFAP108, FAP108, MRD21}, SERPINE1 (serpin family E member 1) [NCBI Gene 5054] {aka PAI, PAI-1, PAI1, PLANH1}, SMC4 (structural maintenance of chromosomes 4) [NCBI Gene 10051] {aka CAP-C, CAPC, SMC-4, SMC4L1}, IGFBP3 (insulin like growth factor binding protein 3) [NCBI Gene 3486] {aka BP-53, IBP-3, IBP3, IGFBP-3}, MT3 (metallothionein 3) [NCBI Gene 4504] {aka GIF, GIFB, GRIF, ZnMT3}, RXRA (retinoid X receptor alpha) [NCBI Gene 6256] {aka NR2B1, RXR-alpha, RXRalpha}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, ZC3H12A (zinc finger CCCH-type containing 12A) [NCBI Gene 80149] {aka MCPIP, MCPIP-1, MCPIP1, Reg1, dJ423B22.1}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, ZNF746 (zinc finger protein 746) [NCBI Gene 155061] {aka PARIS}, JAZF1 (JAZF zinc finger 1) [NCBI Gene 221895] {aka TIP27, ZNF802}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CDCA7 (cell division cycle associated 7) [NCBI Gene 83879] {aka ICF3, JPO1}, ZMYM3 (zinc finger MYM-type containing 3) [NCBI Gene 9203] {aka DXS6673E, MYM, XFIM, XLID112, ZNF198L2, ZNF261}, PAIP1 (poly(A) binding protein interacting protein 1) [NCBI Gene 10605], KLF16 (KLF transcription factor 16) [NCBI Gene 83855] {aka BTEB4, DRRF, NSLP2}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, RNF138 (ring finger protein 138) [NCBI Gene 51444] {aka HSD-4, NARF, STRIN, hNARF}, AXIN2 (axin 2) [NCBI Gene 8313] {aka AXIL, ODCRCS}, TSC1 (TSC complex subunit 1) [NCBI Gene 7248] {aka LAM, TSC}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, ZFHX3 (zinc finger homeobox 3) [NCBI Gene 463] {aka ATBF1, ATBT, ATFB8, C16orf47, EIG20, SCA4}, ZNF296 (zinc finger protein 296) [NCBI Gene 162979] {aka ZFP296, ZNF342}, MORC2 (MORC family CW-type zinc finger 2) [NCBI Gene 22880] {aka CMT2Z, DIGFAN, ZCW3, ZCWCC1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, RNF168 (ring finger protein 168) [NCBI Gene 165918] {aka RIDL, hRNF168}, LRRK2 (leucine rich repeat kinase 2) [NCBI Gene 120892] {aka AURA17, DARDARIN, PARK8, RIPK7, ROCO2}, Ripk1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 306886], FOXO3 (forkhead box O3) [NCBI Gene 2309] {aka AF6q21, FKHRL1, FKHRL1P2, FOXO2, FOXO3A}, ENO1 (enolase 1) [NCBI Gene 2023] {aka ENO1-IT1, ENO1L1, HEL-S-17, MPB1, NNE, PPH}, ZCCHC24 (zinc finger CCHC-type containing 24) [NCBI Gene 219654] {aka C10orf56, Z3CXXC8}, Mlkl (mixed lineage kinase domain like pseudokinase) [NCBI Gene 690743], ZFP36L1 (ZFP36 like 1 zinc finger CCCH-type) [NCBI Gene 677] {aka BRF1, Berg36, ERF-1, ERF1, RNF162B, TIS11B}, ZKSCAN4 (zinc finger with KRAB and SCAN domains 4) [NCBI Gene 387032] {aka P1P373C6, ZNF307, ZNF427, ZSCAN36}, APTX (aprataxin) [NCBI Gene 54840] {aka AOA, AOA1, AXA1, EAOH, EOAHA, FHA-HIT}
- **Diseases:** LNPs (MESH:D011017), oncological (MESH:D000072716), cerebral injuries (MESH:D000070625), neurodevelopmental disorders (MESH:D002658), Neointimal hyperplasia (MESH:D006965), centromeric instability (OMIM:242860), HCC (MESH:D006528), MS (MESH:D009103), HIV (MESH:D015658), immune dysregulation (OMIM:614878), motor dysfunction (MESH:D000068079), polydactyly (MESH:D017689), brain tissue damage (MESH:D017695), chromosomal disorders (MESH:D025063), cognitive decline (MESH:D003072), neuronal apoptosis (MESH:D065703), lacunar infarction (MESH:D059409), Breast cancer (MESH:D001943), TPD (MESH:D055959), Depression (MESH:D003866), TNBC (MESH:D064726), infarct (MESH:D007238), developmental anomalies (MESH:C566440), epileptiform neuronal activity (MESH:D014277), degeneration of dopaminergic neurons (MESH:D009410), Sickle Cell Disease (MESH:D000755), NuRD (MESH:D020257), MPS II (MESH:D016532), functional deficits (MESH:D001289), I/R injury (MESH:C580424), IS (MESH:D002544), ischemic injury (MESH:D017202), immune disorders (MESH:D007154), infection (MESH:D007239), CD (MESH:D003424), cytotoxic (MESH:D064420), Vascular damage (MESH:D057772), Angelman syndrome (MESH:D017204), ALS (MESH:D000690), reperfusion injury (MESH:D015427), thrombosis (MESH:D013927), HCC metastasis (MESH:D009362), microvascular dysfunction (MESH:D017566), Epilepsy (MESH:D004827), RA (MESH:D001172), Mowat-Wilson syndrome (MESH:C536990), MCAO (MESH:D020244), Atherosclerosis (MESH:D050197), brain damage (MESH:D001925), X-linked dystonia-Parkinsonism (MESH:C564048), leukemia (MESH:D007938), Viral infections (MESH:D014777), CRC (MESH:D015179), ICH (MESH:D002543), death (MESH:D003643), Immunodeficiency (MESH:D007153), Hypertension (MESH:D006973), hyperglycemic (MESH:D006944), occlusion (MESH:D001157), brain injury (MESH:D001930)
- **Chemicals:** dopamine (MESH:D004298), DHA (MESH:C027493), ROS (MESH:D017382), glucose (MESH:D005947), serotonin (MESH:D012701), glutathione (MESH:D005978), m6A (MESH:C005955), Lipid (MESH:D008055), Cys (MESH:D003545), minocycline (MESH:D008911), glutarimide (MESH:C007864), NADPH (MESH:D009249), lenalidomide (MESH:D000077269), fatty acid (MESH:D005227), Polydatin (MESH:C058229), serine (MESH:D012694), sulfur (MESH:D013455), curcumin (MESH:D003474), CC-885 (MESH:C000609735), Mithramycin A (MESH:C066851), DEG-77 (-), superoxide (MESH:D013481), clematichinenoside (MESH:C581539), GANT61 (MESH:C551027), poly(ADP-ribose) (MESH:D011064), Na+ (MESH:D012964), Fructose-1,6-bisphosphate (MESH:C029063), ramelteon (MESH:C495910), Fructose-6-Phosphate (MESH:C027618), sorafenib (MESH:D000077157), bufalin (MESH:C022777), Resveratrol (MESH:D000077185), iso-indolinone (MESH:C037432), Rolipram (MESH:D020889), dipeptide (MESH:D004151), 8-OHdG (MESH:D000080242), 2-Phosphoglycerate (MESH:C008885), PEP (MESH:D010728), metformin (MESH:D008687), Daunorubicin (MESH:D003630), mifepristone (MESH:D015735), iron (MESH:D007501), nitrogen (MESH:D009584), Glucose-6-Phosphate (MESH:D019298), His (MESH:D006639), lactate (MESH:D019344), Chiisanoside (MESH:C507583), Glyceraldehyde-3-Phosphate (MESH:D005986), pentose phosphate (MESH:D010428), lipid peroxides (MESH:D008054), pomalidomide (MESH:C467566), aldosterone (MESH:D000450), Dihydroartemisinin (MESH:C039060), N6 methyladenosine (MESH:C010223), metal (MESH:D008670), zinc (MESH:D015032), oxygen (MESH:D010100), beta, beta-dimethylacryloyl alkannin (MESH:C000617126), 1,3-Bisphosphoglycerate (MESH:C015891)
- **Species:** Adenoviridae (family) [taxon 10508], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Respiratory syncytial virus (no rank) [taxon 12814], Hepatitis B virus (no rank) [taxon 10407], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Mus musculus (house mouse, species) [taxon 10090], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Adeno-associated virus (species) [taxon 272636]
- **Mutations:** rs2188972, rs8103163, rs4728142, rs4132601, N159S, rs2188971, rs10947540, rs12946510, T2A, rs7248488, G2019S
- **Cell lines:** VSMC — Homo sapiens (Human), Finite cell line (CVCL_4009)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953826/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953826/full.md

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Source: https://tomesphere.com/paper/PMC12953826