# Structural and morphological dynamics of “on‐path” and “off‐path” oligomers of human islet amyloid polypeptide

**Authors:** Daniel Warren, Jadon Sitton, Dmitry Kurouski

PMC · DOI: 10.1002/pro.70523 · Protein Science : A Publication of the Protein Society · 2026-03-02

## TL;DR

This study explores how human islet amyloid polypeptide aggregates form and how their structures relate to toxicity in Type 2 Diabetes.

## Contribution

The study identifies two distinct early oligomer types with different structural and kinetic roles in IAPP aggregation.

## Key findings

- Donut-like oligomers (DO) are 'on-path' and form parallel β-sheets, leading to fibril formation.
- Round oligomers (RO) are 'off-path', disordered, and persist during aggregation, contributing to toxicity.
- Both structural evolution and persistent 'off-path' oligomers increase cytotoxicity in pancreatic β cells.

## Abstract

The deposition of cytotoxic human islet amyloid polypeptide (IAPP) aggregates is a hallmark feature of Type 2 Diabetes. However, the structural evolution and cytotoxicity of IAPP aggregate species remain poorly understood. This study combines kinetics, biophysical and cell assays to resolve the morphological dynamics of IAPP aggregation. Using atomic force microscopy (AFM) and atomic force microscopy Infrared (AFM‐IR) spectroscopy, we observed two distinctly different types of oligomers, donut‐like (DO) and round oligomers (RO), formed at the early stages of protein aggregation. DO were dominated by parallel β‐sheet secondary structure. Their evanescence is linked to the formation of IAPP fibrils, which also had parallel β‐sheet secondary structure. In contrast, RO had primarily disordered secondary structure and persisted throughout the course of fibril formation. This structural and kinetic analyses showed that RO were “off‐path”, while DO were “on‐path” protein aggregates. Cell toxicity assays indicated that structural evolution of IAPP amyloids as well as persistent “off‐path” oligomeric species both contribute to high cytotoxicity in pancreatic β cells. These results revealed a complex mechanism of IAPP aggregation which is highly important in the context of the prevention of pathological protein aggregation.

## Linked entities

- **Proteins:** IAPP (islet amyloid polypeptide)
- **Diseases:** Type 2 Diabetes (MONDO:0005148)

## Full-text entities

- **Genes:** APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, IGKV3D-20 (immunoglobulin kappa variable 3D-20) [NCBI Gene 28874] {aka A11, A11a, IGKV3D20}, IAPP (islet amyloid polypeptide) [NCBI Gene 3375] {aka DAP, IAP}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, Iapp (islet amyloid polypeptide) [NCBI Gene 24476], TTR (transthyretin) [NCBI Gene 7276] {aka AMYLD1, ATTR, CTS, CTS1, HEL111, HsT2651}
- **Diseases:** DO (MESH:C537419), Alzheimer's and Parkinson's diseases (MESH:D010300), inflammatory (MESH:D007249), hyperglycemia (MESH:D006943), insulin insufficiency (MESH:D000309), cytotoxic (MESH:D064420), RO (MESH:D018208), amyloid (MESH:C000718787), T2D (MESH:D003924)
- **Chemicals:** gold (MESH:D006046), nitrogen (MESH:D009584), ThT (MESH:C009462), TBS (MESH:D013725), amide (MESH:D000577), water (MESH:D014867), PMMA (MESH:D019904), silica (MESH:D012822), AmyloFit (-), silicon (MESH:D012825), CO2 (MESH:D002245), ice (MESH:D007053), ROS (MESH:D017382), PBS (MESH:D007854)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Cell lines:** BRIN-BD11 — Rattus norvegicus (Rat), Hybrid cell line (CVCL_6811), pancreatic beta — Mesocricetus auratus (Golden hamster), Hamster pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_5M15)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953715/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953715/full.md

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Source: https://tomesphere.com/paper/PMC12953715