# Synergistic carcinogenesis of the nasopharyngeal microbiome and Epstein-Barr virus: mechanisms of metabolic reprogramming and immune evasion

**Authors:** Shasha Shen, Juan Li, Sijia Zheng, Xue Cui, Xiaoxia Gou

PMC · DOI: 10.3389/fimmu.2026.1771414 · Frontiers in Immunology · 2026-02-17

## TL;DR

This paper explores how the nasopharyngeal microbiome and Epstein-Barr virus work together to cause nasopharyngeal cancer, focusing on immune evasion and metabolic changes.

## Contribution

The paper introduces the 'SCFA paradox' and highlights novel synergistic mechanisms between the microbiome and EBV in nasopharyngeal carcinoma.

## Key findings

- Microbial dysbiosis in NPC patients involves opportunistic pathogens like Fusobacterium nucleatum and Porphyromonas gingivalis.
- Short-chain fatty acids from the microbiome paradoxically trigger EBV lytic reactivation in B-cells.
- The microbiome aids immune evasion through interactions between Fap2 and TIGIT, alongside EBV's LMP1 protein.

## Abstract

Nasopharyngeal carcinoma (NPC) is strongly associated with Epstein-Barr virus (EBV) infection, but EBV alone is insufficient for tumorigenesis. Recent evidence suggests that the nasopharyngeal microbiome plays a critical, yet underexplored, role in NPC development. This review investigates the synergistic interaction between EBV and the nasopharyngeal microbiome, focusing on microbial dysbiosis and its role in NPC pathogenesis. We highlight significant microbial dysbiosis in NPC patients, characterized by an overgrowth of opportunistic pathogens such as Fusobacterium nucleatum and Porphyromonas gingivalis. These pathogens interact with EBV-infected epithelial cells, amplifying oncogenic signaling through the NF-κB and PI3K/AKT pathways. Crucially, we explore the “SCFA paradox,” where microbial short-chain fatty acids (SCFAs), typically beneficial, act as HDAC inhibitors that paradoxically trigger EBV lytic reactivation in B-cells. Additionally, the microbiome facilitates immune evasion through interactions between F. nucleatum Fap2 and the TIGIT receptor, in synergy with EBV’s LMP1 protein. These findings underscore the importance of the microbiome in NPC pathogenesis and highlight the potential for integrating microbial signatures into diagnostic tools. We conclude by discussing precision therapies, such as bacteriophage treatment, and emphasize the role of next-generation models—specifically Air–Liquid Interface organoids—as functional ‘patient avatars.’ These systems are essential for advancing personalized medicine, as they enable the functional validation of individualized microbial interventions that sequencing alone cannot predict.

Scientific illustration depicts the interactions between Epstein-Barr virus (EBV), microbiome-derived products, and immune mechanisms in the nasopharyngeal epithelium, highlighting molecular pathways, immune evasion strategies, short-chain fatty acid effects, diagnostic markers, and experimental models with annotated legend for all abbreviations.

## Linked entities

- **Proteins:** NFKB1 (nuclear factor kappa B subunit 1), FAP2 (Chalcone-flavanone isomerase family protein), TIGIT (T cell immunoreceptor with Ig and ITIM domains), PDLIM7 (PDZ and LIM domain 7)
- **Diseases:** Nasopharyngeal carcinoma (MONDO:0015459), Epstein-Barr virus infection (MONDO:0005111)
- **Species:** Fusobacterium nucleatum (taxon 851), Porphyromonas gingivalis (taxon 837)

## Full-text entities

- **Genes:** TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, LMP1 [NCBI Gene 3783750], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Diseases:** metastasis (MESH:D009362), viral infection (MESH:D014777), colorectal cancer (MESH:D015179), tumorigenic (MESH:D002471), carcinogenic (MESH:D011230), infected (MESH:D007239), Cytotoxicity (MESH:D064420), nasopharyngeal lesions (MESH:D009302), fungal infections (MESH:D009181), NPC (MESH:D000077274), melanoma (MESH:D008545), EBV (MESH:D020031), inflammation (MESH:D007249), Microbial dysbiosis (MESH:D064806), Cancer (MESH:D009369), hypoxic (MESH:D002534), carcinogenesis (MESH:D063646)
- **Chemicals:** N-nitroso compounds (-), nitrite (MESH:D009573), butyrate (MESH:D002087), LPS (MESH:D008070), acetate (MESH:D000085), SCFA (MESH:D005232), oxygen (MESH:D010100), nitrate (MESH:D009566), N-nitrosamines (MESH:D009602)
- **Species:** Porphyromonas gingivalis (species) [taxon 837], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Fusobacterium nucleatum (species) [taxon 851], Bacteriophage sp. (species) [taxon 38018], Lactobacillus (genus) [taxon 1578], Veillonella (genus) [taxon 29465], Actinomyces (genus) [taxon 1654], Clostridia (class) [taxon 186801]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953549/full.md

## References

73 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953549/full.md

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Source: https://tomesphere.com/paper/PMC12953549