# The influence of a plant-based diet on the composition and functions of the human gut microbiota: a review

**Authors:** Erika Egas-Montenegro, Jennifer Echeverria-Chilla, Marcela García-Ulloa, Cristina Aizaga-Benalcazar, Roberto Ordoñez-Araque

PMC · DOI: 10.3389/fnut.2026.1774375 · Frontiers in Nutrition · 2026-02-17

## TL;DR

This paper reviews how plant-based diets affect gut microbes, promoting diversity and beneficial functions like anti-inflammation and metabolic health.

## Contribution

The paper provides a comprehensive review of how plant-based diets influence gut microbiota composition and functions.

## Key findings

- Plant-based diets enhance microbial diversity and promote beneficial metabolites like short-chain fatty acids.
- Dietary fiber, micronutrients, and bioactive compounds from plants significantly impact gut microbiota.
- Key genera like Bacteroides and Prevotella are linked to plant-based diets and gut health benefits.

## Abstract

The human gut microbiota represents a highly diverse ecosystem, with its composition and functions influenced by dietary, biological, and environmental factors. This research aimed to analyze how diet significantly impacts microbial dynamics, particularly through the consumption of dietary fiber, micronutrients, and bioactive compounds. A comprehensive review of major scientific databases was conducted to identify and evaluate studies that explored the relationship between diet and gut microbiota, as well as the primary microbial genera and species linked to these dietary patterns. The primary bacterial phyla present in the human gut include Firmicutes, Bacteroidetes, Actinobacteria, and Verrucomicrobiota. Among these phyla, notable genera include Bacteroides, Prevotella, Faecalibacterium, Bifidobacterium, and Akkermansia. These taxa are integral to several essential processes, such as the degradation of complex polysaccharides, the synthesis of short-chain fatty acids, the modulation of immune responses, and the preservation of the intestinal barrier. From a nutritional perspective, current evidence indicates that a plant-based diet may enhance microbial diversity, augment the production of beneficial metabolites such as short-chain fatty acids, and facilitate bacterial profiles that are associated with anti-inflammatory properties, metabolic regulation, and the maintenance of epithelial integrity. In conclusion, dietary patterns that are particularly rich in fiber, micronutrients, and bioactive compounds derived from plant sources have a profound impact on the composition and functions of the gut microbiota. A thorough understanding of these interactions is crucial for developing nutritional strategies that enhance both gut health and overall well-being.

## Full-text entities

- **Diseases:** chronic kidney disease (MESH:D051436), central nervous system disorders (MESH:D002493), opportunistic pathogens (MESH:D009894), cancer (MESH:D009369), diabetes (MESH:D003920), pancreatic cancer (MESH:D010190), cardiometabolic (MESH:D024821), chronic inflammation (MESH:D007249), cardiovascular, metabolic, immune, and neurodegenerative diseases (MESH:D019636), metabolic disorders (MESH:D008659), noncommunicable diseases (MESH:D000073296), Overweight (MESH:D050177), obese (MESH:D009765), weight gain (MESH:D015430), weight loss (MESH:D015431), gastrointestinal disorders (MESH:D005767), cardiovascular disease (MESH:D002318), infections (MESH:D007239), Crohn's disease (MESH:D003424), colorectal cancer (MESH:D015179), hypertension (MESH:D006973), rheumatoid arthritis (MESH:D001172), inflammatory arthritis (MESH:D001168), diverticular disease (MESH:D000076385), chronic diseases (MESH:D002908), multiple sclerosis (MESH:D009103), type 2 diabetes mellitus (MESH:D003924), cataracts (MESH:D002386)
- **Chemicals:** vitamins K2 (MESH:D024482), triglycerides (MESH:D014280), choline (MESH:D002794), lactic acid (MESH:D019344), polysaccharide (MESH:D011134), zinc (MESH:D015032), TMAO (MESH:C005855), sugar (MESH:D000073893), fiber (MESH:D004043), TMA (MESH:C023336), cholesterol (MESH:D002784), glutamate (MESH:D018698), inulin (MESH:D007444), glucosinolates (MESH:D005961), copper (MESH:D003300), GABA (MESH:D005680), biotin (MESH:D001710), norepinephrine (MESH:D009638), iron (MESH:D007501), carotenoids (MESH:D002338), Carbohydrates (MESH:D002241), fatty acids (MESH:D005227), selenium (MESH:D012643), xylo-oligosaccharides (MESH:C570991), propionate (MESH:D011422), starch (MESH:D013213), riboflavin (MESH:D012256), amino acid (MESH:D000596), thiamine (MESH:D013831), butyrate (MESH:D002087), vitamin K (MESH:D014812), carnitine (MESH:D002331), potassium (MESH:D011188), oligosaccharides (MESH:D009844), polyunsaturated fatty acids (MESH:D005231), bile salts (MESH:D001647), alpha and (-), folate (MESH:D005492), SCFA (MESH:D005232), Beta-glucans (MESH:D047071), magnesium (MESH:D008274), Flavonoids (MESH:D005419), glucose (MESH:D005947), alcohol (MESH:D000438), dopamine (MESH:D004298), allicin (MESH:C006452), acetate (MESH:D000085), cobalamin (MESH:D014805), resistant starch (MESH:D000084922), lipid (MESH:D008055), polyphenols (MESH:D059808)
- **Species:** Lactobacillus (genus) [taxon 1578], Prevotella (genus) [taxon 838], Bacillus subtilis (species) [taxon 1423], Escherichia coli (E. coli, species) [taxon 562], Clostridium perfringens (species) [taxon 1502], Faecalibacterium (genus) [taxon 216851], Allium sativum (garlic, species) [taxon 4682], Actinomycetota (actinobacteria, phylum) [taxon 201174], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Clostridia (class) [taxon 186801], Bacteroides sp. (species) [taxon 29523], Agathobacter rectalis (species) [taxon 39491], Enterococcus (genus) [taxon 1350], Ruminococcus bromii (species) [taxon 40518], Roseburia (genus) [taxon 841], Campylobacter jejuni (species) [taxon 197], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853], Bifidobacterium (genus) [taxon 1678], Bacteroides (genus) [taxon 816], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Bacteroides fragilis (species) [taxon 817], Bilophila (genus) [taxon 35832], Verrucomicrobiota (phylum) [taxon 74201], Akkermansia muciniphila (species) [taxon 239935], Bacteroidia (class) [taxon 200643], Bacilli (class) [taxon 91061], gut metagenome (species) [taxon 749906], Akkermansia (genus) [taxon 239934], Bacillota (clostridial firmicutes, phylum) [taxon 1239]

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## References

118 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953512/full.md

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Source: https://tomesphere.com/paper/PMC12953512