# Unraveling the role of LINC02657 in clear cell renal cell carcinoma: insights into tumor aggression, immune modulation, and treatment response

**Authors:** Juncheng Tong, Yang Liu, Aifa Tang, Xiangguo Xiong, Lifang Liu, Zhenqing Fan, Cheng Qian, Hongbing Mei, Han Wang

PMC · DOI: 10.3389/fimmu.2026.1735169 · Frontiers in Immunology · 2026-02-17

## TL;DR

This study explores how the LINC02657 RNA contributes to kidney cancer progression, immune response, and treatment outcomes, offering new insights for personalized therapies.

## Contribution

The study identifies LINC02657 as a novel oncogenic lncRNA in ccRCC with roles in tumor progression, immune modulation, and drug sensitivity.

## Key findings

- High LINC02657 expression correlates with poor survival in clear cell renal cell carcinoma patients.
- LINC02657 knockdown reduces tumor cell proliferation, migration, and epithelial-mesenchymal transition.
- Low LINC02657 levels increase sensitivity to chemotherapy drugs like docetaxel and gemcitabine.

## Abstract

The role of long non-coding RNA LINC02657 in clear cell renal cell carcinoma (ccRCC) is poorly defined. This study aims to characterize its expression, clinical relevance, and oncogenic functions in ccRCC.

We analyzed LINC02657 expression in pan-cancer and ccRCC cohorts from TCGA and ICGC. Prognostic value for overall (OS) and disease-specific survival (DSS) was evaluated using Kaplan-Meier and multivariate Cox regression. Functional mechanisms were investigated via Gene Set Enrichment Analysis (GSEA) and in vitro assays in 786-O and ACHN cells following LINC02657 knockdown, assessing proliferation, migration, invasion, and epithelial-mesenchymal transition (EMT). Drug sensitivity analysis was conducted using the GDSC2 database.

LINC02657 was significantly upregulated in ccRCC tissues. High LINC02657 expression predicted poorer OS and DSS and was an independent prognostic factor for adverse outcomes. GSEA linked it to cell cycle regulation and mitotic checkpoint signaling. Functional experiments demonstrated that LINC02657 knockdown effectively inhibited ccRCC cell proliferation, migration, and invasion, and promoted reversal of EMT toward an epithelial phenotype. Additionally, its expression was associated with immune cell infiltration and checkpoint molecule levels. Drug sensitivity profiling indicated that low LINC02657 expression enhanced sensitivity to chemotherapy agents, including docetaxel, gemcitabine, and 5-fluorouracil.

LINC02657 is a critical oncogenic lncRNA in ccRCC, promoting tumor progression by regulating cell cycle, EMT, and immune microenvironment. It serves as a robust independent prognostic biomarker and a potential therapeutic target, offering valuable insights for personalized ccRCC treatment strategies.

## Linked entities

- **Genes:** LASTR (lncRNA associated with SART3 regulation of splicing) [NCBI Gene 105376382]
- **Chemicals:** docetaxel (PubChem CID 148124), gemcitabine (PubChem CID 60750), 5-fluorouracil (PubChem CID 3385)
- **Diseases:** clear cell renal cell carcinoma (MONDO:0005005), ccRCC (MONDO:0007763)

## Full-text entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, TNFRSF18 (TNF receptor superfamily member 18) [NCBI Gene 8784] {aka AITR, CD357, ENERGEN, GITR, GITR-D}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, PVT1 (Pvt1 oncogene) [NCBI Gene 5820] {aka LINC00079, MIR1204HG, NCRNA00079, TP53LC09, onco-lncRNA-100}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, VIM (vimentin) [NCBI Gene 7431], TNFSF4 (TNF superfamily member 4) [NCBI Gene 7292] {aka CD134L, CD252, GP34, OX-40L, OX4OL, TNLG2B}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, HOTAIR (HOX transcript antisense RNA) [NCBI Gene 100124700] {aka HOXAS, HOXC-AS4, HOXC11-AS1, NCRNA00072}, VHL (von Hippel-Lindau tumor suppressor) [NCBI Gene 7428] {aka HRCA1, RCA1, VHL1, pVHL}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, DNAAF3 (dynein axonemal assembly factor 3) [NCBI Gene 352909] {aka C19orf51, CILD2, DAB1, PCD, PF22}, MMRN1 (multimerin 1) [NCBI Gene 22915] {aka ECM, EMILIN4, GPIa*, MMRN}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}
- **Diseases:** inflammatory (MESH:D007249), Helicobacter pylori infection (MESH:D016481), Cancer (MESH:D009369), endocervical adenocarcinoma (MESH:D000230), lung adenocarcinoma (MESH:D000077192), stomach adenocarcinoma (MESH:D013274), Vibrio cholerae infection (MESH:D002771), oncogenesis (MESH:D063646), cholangiocarcinoma (MESH:D018281), COAD (MESH:D029424), kidney cancer (MESH:D007680), colon adenocarcinoma (MESH:D003110), head and neck squamous cell carcinoma (MESH:D000077195), cervical squamous cell carcinoma (MESH:D002294), metastasis (MESH:D009362), DFS (MESH:D011475), thyroid carcinoma (MESH:D013964), infection (MESH:D007239), KICH (MESH:D007674), breast invasive carcinoma (MESH:D001943), skin cutaneous melanoma (MESH:C562393), esophageal carcinoma (MESH:D004938), BRCA (MESH:D001941), LIHC (MESH:D006528), Clear cell renal cell carcinoma (MESH:D002292), bladder cancer (MESH:D001749)
- **Chemicals:** streptomycin (MESH:D013307), tyrosine (MESH:D014443), 5-fluorouracil (MESH:D005472), retinol (MESH:D014801), TRIzol (MESH:C411644), SDS (MESH:D012967), EdU (MESH:C022811), ethanol (MESH:D000431), crystal violet (MESH:D005840), propidium iodide (MESH:D011419), CCK-8 (-), penicillin (MESH:D010406), CO2 (MESH:D002245), Savolitinib (MESH:C000593259), PVDF (MESH:C024865), gemcitabine (MESH:D000093542), PBS (MESH:D007854), DAPI (MESH:C007293), docetaxel (MESH:D000077143)
- **Species:** Vibrio cholerae (species) [taxon 666], Helicobacter pylori (species) [taxon 210], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CCK-8 — Homo sapiens (Human), T-cell prolymphocytic leukemia, Cancer cell line (CVCL_5443), 786-O — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1051), ACHN — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_1067), CAKI-1 — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_0234), 769-P — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1050)

## Full text

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## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953511/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953511/full.md

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Source: https://tomesphere.com/paper/PMC12953511