# Farnesol, the farnesol pathway, and the immune-gut-brain axis

**Authors:** Megan Gates, Sean M. Schumacher, William J. Doyle, Natalie Sofaly, Jean-Baptiste Roullet, Javier Ochoa-Repáraz

PMC · DOI: 10.3389/fphar.2026.1718322 · Frontiers in Pharmacology · 2026-02-17

## TL;DR

This review explores how farnesol, a signaling molecule, connects the gut, immune system, and brain, offering insights into its role in health and disease.

## Contribution

The paper proposes farnesol as a key signaling molecule linking the immune-gut-brain axis, highlighting its novel regulatory roles.

## Key findings

- Farnesol influences gut microbiota and immune system interactions.
- It modulates intracellular calcium signaling and neuroinflammatory responses.
- Farnesol shows protective effects in models of neuroinflammatory diseases.

## Abstract

Experimental models and clinical evidence suggest that the gut and the central nervous system (CNS) interact in a multifactorial, bidirectional manner. A third player, the immune system, has recently been identified in these interactions, with research linking the gut microbiome to inflammatory conditions, including those affecting the CNS. The molecular signals involved in communication between the gut, brain, and immune system have been extensively studied. However, no unique signaling pathway has been identified for each component of the immune-gut-brain (IGB) axis to date. In this review, we argue that isoprenoids, and specifically farnesol, are key signaling molecules that link the gut and its microbiota, the immune system, and the CNS. The pharmacological properties of farnesol, an intermediate in the broadly conserved mevalonate pathway, are diverse and encompass quorum sensing and microbial biofilm inhibition, neuroinflammatory protection, and modulation of intracellular calcium (Ca2+) signaling pathways. Many of these signaling pathways are implicated in neuron-to-neuron communication and in the responses of immunocompetent cells to immunogenic stimuli. We will first address the biological relevance of the immune-gut-brain axis and the gut microbiome in regulating health and disease. Next, we will review the molecular and cellular mechanisms by which farnesol regulates both the gut microbiota and the host’s innate and adaptive immune systems. Finally, we will provide a perspective on the immunoregulatory mechanisms underlying farnesol’s protective properties in models of neuroinflammatory diseases. In summary, we propose a review of the most salient studies that establish farnesol as a significant modulator of the immune-gut-brain axis.

## Linked entities

- **Chemicals:** farnesol (PubChem CID 445070)

## Full-text entities

- **Genes:** COX2 (cytochrome c oxidase subunit 2) [NCBI Gene 854622] {aka OXI1, OXII}, MID1 (Mid1p) [NCBI Gene 855425], PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465] {aka NR1C1, PPAR, PPAR-alpha, PPARalpha, hPPAR}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, CCH1 (calcium channel protein CCH1) [NCBI Gene 853131], TEC1 (Tec1p) [NCBI Gene 852377] {aka ROC1}, Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) [NCBI Gene 12981] {aka CSF, Csfgm, GMCSF, Gm-CSf, MGI-IGM}, CYP2E1 (cytochrome P450 family 2 subfamily E member 1) [NCBI Gene 1571] {aka CPE1, CYP2E, P450-J, P450C2E}, RAS1 (Ras family GTPase RAS1) [NCBI Gene 854268], JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, Gabrg2 (gamma-aminobutyric acid type A receptor, subunit gamma 2) [NCBI Gene 14406] {aka GABAA-R, Gabrg-2, gamma2}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, UGT2B7 (UDP glucuronosyltransferase family 2 member B7) [NCBI Gene 7364] {aka UDPGT 2B7, UDPGT 2B9, UDPGT2B7, UDPGTH2, UDPGTh-2, UGT2B9}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Il5 (interleukin 5) [NCBI Gene 16191] {aka Il-5}, AKR1A1 (aldo-keto reductase family 1 member A1) [NCBI Gene 10327] {aka ALDR1, ALR, ARM, DD3, HEL-S-6}, UGT1A1 (UDP glucuronosyltransferase family 1 member A1) [NCBI Gene 54658] {aka BILIQTL1, GNT1, HUG-BR1, UDPGT, UDPGT 1-1, UGT1}, ADH1A (alcohol dehydrogenase 1A (class I), alpha polypeptide) [NCBI Gene 124] {aka ADH1}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, DEFB1 (defensin beta 1) [NCBI Gene 1672] {aka BD1, DEFB-1, DEFB101, HBD1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, MATALPHA1 (transcriptional co-activator mating type protein alpha) [NCBI Gene 850407] {aka ALPHA1}, RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, DPP3 (dipeptidyl peptidase 3) [NCBI Gene 10072] {aka DPPIII}, NR3C1 (nuclear receptor subfamily 3 group C member 1) [NCBI Gene 2908] {aka GCCR, GCR, GCRST, GR, GRL}
- **Diseases:** deaths (MESH:D003643), DGBI (MESH:D001927), demyelination (MESH:D003711), colon cancer (MESH:D015179), motility disorders (MESH:D015835), bacterial translocation (MESH:D014178), astrogliosis (MESH:D005911), epilepsy (MESH:D004827), cytotoxicity (MESH:D064420), cocaine addiction (MESH:D019970), skin infections (MESH:D007239), cardiovascular diseases (MESH:D002318), Colitis (MESH:D003092), gastrointestinal disorders (MESH:D005767), hypersensitivity (MESH:D004342), bacterial (MESH:D001424), neuronal death (MESH:D009410), IBS (MESH:D043183), breast cancer (MESH:D001943), IBD (MESH:D015212), EAE (MESH:D004681), axonal damage and loss (MESH:D001480), Charcot-Marie-Tooth type 1A (MESH:D002607), bloodstream infections (MESH:D018805), MS (MESH:D009103), dyspepsia (MESH:D004415), pain (MESH:D010146), mitochondrial dysfunction (MESH:D028361), PD (MESH:D010300), Inflammation (MESH:D007249), Neurodegenerative disorders (MESH:D019636), inflammatory demyelination (MESH:D020277), autoimmune and neuroinflammatory (MESH:D000090862), anxiety (MESH:D001007), neurotoxicity (MESH:D020258), nonalcoholic fatty liver disease (MESH:D065626), AD (MESH:D000544), irritation (MESH:D001523), Cancer (MESH:D009369), dysbiosis (MESH:D064806), gastroparesis (MESH:D018589), functional disorders (MESH:D003291), immune-mediated diseases (MESH:C567355), carcinogenesis (MESH:D063646), retinopathies (MESH:D058437), mevalonate kinase deficiency (MESH:D054078), neurodegenerative inherited disease (MESH:D020271), Smith-Lemli-Opitz syndrome (MESH:D019082), autoimmune (MESH:D001327), burn (MESH:D002056), seizure (MESH:D012640), genetic disorder (MESH:D030342)
- **Chemicals:** K+ (MESH:D011188), FMP (MESH:C059195), Na+ (MESH:D012964), farnesol derivatives (-), farnesoic acid (MESH:C007702), bile acid (MESH:D001647), oils (MESH:D009821), vitamin K (MESH:D014812), farnesyl acetate (MESH:C037088), NADPH (MESH:D009249), reactive nitrogen species (MESH:D026361), lipid (MESH:D008055), LPS (MESH:D008070), DSS (MESH:D016264), FPP (MESH:C004808), steroid hormones (MESH:D013256), MEP (MESH:C114232), glucose (MESH:D005947), serotonin (MESH:D012701), Calcium (MESH:D002118), ROS (MESH:D017382), SCFAs (MESH:D005232), sphingolipid (MESH:D013107), IPP (MESH:C004809), verapamil (MESH:D014700), tryptophan (MESH:D014364), aromatic amino acids (MESH:D024322), oxygen (MESH:D010100), geranylgeraniol (MESH:C017338), MVA (MESH:D008798), DMAPP (MESH:C043060), -carbon (MESH:D002244), polysaccharides (MESH:D011134), farnesal (MESH:C084519), Isoprenoids (MESH:D013729), essential oils (MESH:D009822), water (MESH:D014867), Farnesol (MESH:D005204), octanol (MESH:D000442), carotenoids (MESH:D002338), pyocyanin (MESH:D011710), Cholesterol (MESH:D002784), PQS (MESH:C407944), acrylamide (MESH:D020106), cyclic AMP (MESH:D000242), dihydropyridines (MESH:D004095), gamma-aminobutyric acid (MESH:D005680), glycolipids (MESH:D006017), gentamicin (MESH:D005839)
- **Species:** Aspergillus flavus (species) [taxon 5059], Candida dubliniensis (species) [taxon 42374], Danio rerio (leopard danio, species) [taxon 7955], Solanum lycopersicum (tomato, species) [taxon 4081], Homo sapiens (human, species) [taxon 9606], Bifidobacterium (genus) [taxon 1678], Staphylococcus aureus (species) [taxon 1280], Matricaria chamomilla var. recutita (German chamomile, varietas) [taxon 127986], Rattus norvegicus (brown rat, species) [taxon 10116], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Cymbopogon citratus (lemon grass, species) [taxon 66014], Acinetobacter baumannii (species) [taxon 470], Citronella (genus) [taxon 159356], gut metagenome (species) [taxon 749906], Enterococcus faecium (species) [taxon 1352], Bacillus subtilis (species) [taxon 1423], Escherichia coli (E. coli, species) [taxon 562], Pichia kudriavzevii (species) [taxon 4909], Streptococcus mutans (species) [taxon 1309], Callithrix jacchus (common marmoset, species) [taxon 9483], Candida albicans (species) [taxon 5476], Klebsiella pneumoniae (species) [taxon 573], Candidozyma auris (species) [taxon 498019], Lactobacillus (genus) [taxon 1578], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Vachellia farnesiana (sheep's briar, species) [taxon 72368], Penicillium expansum (species) [taxon 27334], Pseudomonas aeruginosa (species) [taxon 287], Mus musculus (house mouse, species) [taxon 10090], Meiothermus ruber (species) [taxon 277], Nakaseomyces glabratus (species) [taxon 5478], Zingiber officinale (ginger, species) [taxon 94328], Rosa gallica (apothecary rose, species) [taxon 74632]
- **Cell lines:** Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), H460 lung carcinoma — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0459)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12953405/full.md

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953405/full.md

## References

231 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953405/full.md

---
Source: https://tomesphere.com/paper/PMC12953405