# Guideline-based strategies to identify severe cytokine release syndrome in COVID-19 and cancer immunotherapy using large-scale electronic health records

**Authors:** Philippe A. Robert, Jonas Denck, Cao Tri Do, Elif Ozkirimli, Candice Jamois, Chiara Corso, Ken Wang, Christoph T. Berger

PMC · DOI: 10.3389/fdgth.2025.1625889 · Frontiers in Digital Health · 2026-02-17

## TL;DR

This study explores how to identify severe cytokine release syndrome in EHR data using guidelines, enabling better risk prediction for patients with cancer and COVID-19.

## Contribution

A novel EHR-based strategy for identifying CRS using grading guidelines rather than diagnosis codes.

## Key findings

- CRS diagnosis codes were underutilized and insufficient for severity assessment.
- Using grading guidelines identified 3.7% of 2.5 million COVID-19 patients and 31.5% of blinatumomab-treated patients with grade 2 or higher CRS.
- Severe CRS in COVID-19 patients showed varied inflammatory levels.

## Abstract

Cytokine Release Syndrome (CRS) is a life-threatening adverse event of cancer immunotherapies and a complication of infections. Predicting which patients are at risk for severe CRS would inform mitigation decisions and drug development, but requires large, reliably labeled datasets.

This study evaluates the feasibility of disease-agnostic case identification of CRS patterns in large-scale Electronic Health Records (EHR) to generate high-quality cohorts of CRS-positive and CRS-negative patients.

Using the Optum® de-identified COVID-19 EHR dataset, we isolated 2.5 million patients with active COVID-19 and 171 individuals treated with the T-cell Engager (TCE) blinatumomab. Diagnosis codes for CRS were underutilized and provided limited information on severity. Instead, we implemented the consensus CRS grading guidelines, which identified 92,541 COVID-19 patients (3.7%) and 54 blinatumomab patients (31.5%) with grade 2 or higher CRS, respectively. Severe CRS COVID-19 patients showed heterogeneous inflammatory levels.

Our EHR-based CRS case identification strategy is suitable for risk factor analysis and developing CRS risk prediction models.

## Linked entities

- **Diseases:** Cytokine Release Syndrome (MONDO:0600008), cancer (MONDO:0004992), COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}
- **Diseases:** hypotension (MESH:D007022), autoinflammatory conditions (MESH:D056660), Fever (MESH:D005334), hemochromatosis (MESH:D006432), hypoxemia (MESH:D000860), respiratory failure (MESH:D012131), multi-organ failure (MESH:D009102), dengue (MESH:D003715), streptococcal sepsis (MESH:D013290), hypoxic (MESH:D002534), pneumonia (MESH:D011014), Hyperferritinemia (MESH:D000085583), neurotoxicity (MESH:D020258), endothelial dysfunction (MESH:D014652), lung damage (MESH:D008171), lymphocytopenia (MESH:D008231), cancer (MESH:D009369), pulmonary edema (MESH:D011654), lung injury (MESH:D055370), disease (MESH:D004194), Declercq's inflammatory (MESH:D007249), HLH (MESH:D051359), Syndromes (MESH:D013577), complement dysregulation (OMIM:614878), malaria (MESH:D008288), tissue injury (MESH:D017695), Severe (MESH:D045169), Sepsis (MESH:D018805), infectious (MESH:D003141), CRS 2 (MESH:D000080424), inflammatory drugs (MESH:D000081015), ASTCT (MESH:C000719191), heart failure (MESH:D006333), HIS (MESH:C538320), CD (MESH:D003424), cardiovascular instability (MESH:D002318), coagulopathy (MESH:D001778), infected (MESH:D007239), -cov-2 (MESH:D000086382), Adult-onset Still's disease (MESH:D016706), LDH (MESH:C538133), cytotoxicity (MESH:D064420), TCE (MESH:D016399), microvascular injury (MESH:D017566), death (MESH:D003643), coronavirus (MESH:D018352)
- **Chemicals:** triglyceride (MESH:D014280), Blinatumomab (MESH:C510808), epinephrine (MESH:D004837), ibuprofen (MESH:D007052), paracetamol (MESH:D000082), oxygen (MESH:D010100), tocilizumab (MESH:C502936), TCE (-)
- **Species:** Gammacoronavirus (genus) [taxon 694013], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12953395/full.md

## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12953395/full.md

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Source: https://tomesphere.com/paper/PMC12953395