# Regulatory mechanisms of amino acid metabolic pathways in Rhododendron chrysanthum Pall. Under UV-B stress

**Authors:** Jie Lyu, Xiangqun Li, Wang Yu, Xiangru Zhou, Hongwei Xu, Xiaofu Zhou

PMC · DOI: 10.1371/journal.pone.0343024 · PLOS One · 2026-03-02

## TL;DR

This study explores how Rhododendron chrysanthum responds to UV-B stress through amino acid metabolic pathways and transcription factors.

## Contribution

The study identifies specific transcription factors and amino acid metabolic pathways involved in UV-B stress resistance in Rhododendron chrysanthum.

## Key findings

- bHLH and WRKY transcription factors regulate amino acid metabolic pathways under UV-B stress.
- L-phenylalanine and L-tyrosine levels increase due to the activity of these transcription factors.
- The findings provide insights into UV-B resistance mechanisms in Rhododendron chrysanthum.

## Abstract

UV-B radiation, worsened by ozone layer depletion, threatens plant health. The alpine plant Rhododendron chrysanthum has evolved mechanisms to counteract UV-B damage. This study examined the response of R. chrysanthum seedlings to UV-B radiation in an artificial climate chamber, focusing on the molecular mechanisms through metabolomics and transcriptomics. We identified 2 distinct amino acids, 35 differentially expressed genes (DEGs), and 2 families of transcription factors (TFs), which involved in amino acids metabolic pathways, including the biosynthesis of phenylalanine, tyrosine, and tryptophan, as well as phenylpropanoid biosynthesis and phenylalanine metabolism. Under UV-B stress, bHLH TFs significantly correlated with the expression of aroD, aroE, TAT, TRP3, trpD, DDC/TDC, PAAS, HCT, CCR, and COMT, thereby accumulating L-phenylalanine and L-tyrosine levels. WRKY TFs significantly correlated with the expression of all these enzymes except COMT, thus accumulating the levels of L-phenylalanine and L-tyrosine. These two families of TFs exhibit both synergistic and antagonistic regulatory roles in amino acid metabolic pathways. The findings presented are significant not only for understanding the UV-B resistance of R. chrysanthum but also for serving as a reference for the study of other plant species. This research will contribute to the theoretical foundation necessary for the cultivation of plant varieties with enhanced UV-B stress tolerance.

## Linked entities

- **Genes:** LNCAROD (lncRNA activating regulator of DKK1) [NCBI Gene 101928687], aroE (shikimate dehydrogenase) [NCBI Gene 880894], TAT (tyrosine aminotransferase) [NCBI Gene 6898], TRP-TGG3-1 (tRNA-Pro (anticodon TGG) 3-1) [NCBI Gene 7219], trpD (anthranilate phosphoribosyltransferase) [NCBI Gene 880665], LOC104444552 (tyrosine decarboxylase) [NCBI Gene 104444552], Hct (hair constriction) [NCBI Gene 104089], CCR (cinnamoyl-CoA reductase) [NCBI Gene 100796771], COMT (catechol-O-methyltransferase) [NCBI Gene 1312]

## Full-text entities

- **Genes:** MPK1 (mitogen-activated protein kinase 1) [NCBI Gene 837559] {aka ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, mitogen-activated protein kinase 1}, TAT (tyrosine aminotransferase) [NCBI Gene 6898], ERF13 (ethylene-responsive element binding factor 13) [NCBI Gene 819093] {aka ATERF13, EREBP, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, T13E15.15, ethylene-responsive element binding factor 13}, ALC (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 836846] {aka ALCATRAZ, K21H1.7, K21H1_7}, PIF4 (phytochrome interacting factor 4) [NCBI Gene 818903] {aka AtPIF4, MFL8.13, MFL8_13, SRL2, phytochrome interacting factor 4}, WRKY36 (WRKY DNA-binding protein 36) [NCBI Gene 843317] {aka ATWRKY36, T17F3.16, T17F3_16, WRKY DNA-binding protein 36}, WRKY3 (WRKY DNA-binding protein 3) [NCBI Gene 814863] {aka T4M8.23, T4M8_23, WRKY DNA-binding protein 3}, CPK1 (calcium dependent protein kinase 1) [NCBI Gene 830366] {aka ATCPK1, CALCIUM DEPENDENT PROTEIN KINASE, calcium dependent protein kinase 1}, BES1 (Brassinosteroid signaling positive regulator (BZR1) family protein) [NCBI Gene 838518] {aka 107 PROTEIN, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7}, AP2 (Integrase-type DNA-binding superfamily protein) [NCBI Gene 829845] {aka AP22.49, AP22_49, APETALA 2, AtAP2, FL1, FLO2}, AT1G01260 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 839545] {aka F6F3.7, F6F3_7, JAM2, Jasmonate Associated MYC2 LIKE 2}, CAD1 (cinnamyl-alcohol dehydrogenase) [NCBI Gene 843600] {aka ATCAD1, CINNAMYL ALCOHOL DEHYDROGENASE 1, F28P22.13, F28P22_13, cinnamyl-alcohol dehydrogenase}, WRKY33 (WRKY DNA-binding protein 33) [NCBI Gene 818429] {aka ATWRKY33, T19C21.4, T19C21_4, WRKY DNA-BINDING PROTEIN 33, WRKY DNA-binding protein 33}, UVR8 (Regulator of chromosome condensation (RCC1) family protein) [NCBI Gene 836506] {aka MGI19.7, MGI19_7, UVB-RESISTANCE 8}, TRP-TGG3-1 (tRNA-Pro (anticodon TGG) 3-1) [NCBI Gene 7219] {aka TRNAP3, TRP-TGG3-5, TRP3}, TTG1 (Transducin/WD40 repeat-like superfamily protein) [NCBI Gene 832523] {aka ATTTG1, K18P6.4, K18P6_4, TRANSPARENT TESTA GLABRA 1, TTG, UNARMED 23}, BIM1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 830708] {aka T22D6.70, T22D6_70}, 4CL2 (4-coumarate:CoA ligase 2) [NCBI Gene 821678] {aka 4-COUMARATE:COA LIGASE, 4-coumarate:CoA ligase 2, AT4CL2}, MYC2 (Basic helix-loop-helix (bHLH) DNA-binding family protein) [NCBI Gene 840158] {aka ATMYC2, F6N18.4, F6N18_4, JAI1, JASMONATE INSENSITIVE 1, JIN1}, EIN3 (Ethylene insensitive 3 family protein) [NCBI Gene 821625] {aka AtEIN3, ETHYLENE-INSENSITIVE3}, WRKY6 (WRKY family transcription factor) [NCBI Gene 842527] {aka ATWRKY6, F19K23.22, F19K23_22}, HCT (hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase) [NCBI Gene 834951] {aka K19E20.4, K19E20_4, hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase}, AT5G40153 (peroxidase) [NCBI Gene 28721236], TT4 (Chalcone and stilbene synthase family protein) [NCBI Gene 831241] {aka ATCHS, CHALCONE SYNTHASE, CHALCONE/STILBENE SYNTHASE, CHS, MAC12.28, MAC12_28}, COMT (catechol-O-methyltransferase) [NCBI Gene 1312] {aka HEL-S-98n}, C4H (cinnamate-4-hydroxylase) [NCBI Gene 817599] {aka ATC4H, CINNAMATE 4-HYDROXYLASE, CINNAMATE-4-HYDROXYLASE, CYP73A5, REDUCED EPRDERMAL FLUORESCENCE 3, REF3}, AOC2 (allene oxide cyclase 2) [NCBI Gene 822168] {aka allene oxide cyclase 2}, GNC (GATA type zinc finger transcription factor family protein) [NCBI Gene 835788] {aka GATA, GATA TRANSCRIPTION FACTOR 21, GATA21, MPI10.2, MPI10_2, carbon metabolism-involved}, ICE1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 822287] {aka A. THALIANA INDUCER OF CBP EXPRESSION 1, ATICE1, INDUCER OF CBF EXPRESSION 1, SCREAM, SCRM}, AOC3 (allene oxide cyclase 3) [NCBI Gene 822169] {aka allene oxide cyclase 3}, HFR1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 839300] {aka FBI1, LONG HYPOCOTYL IN FAR-RED, REDUCED PHYTOCHROME SIGNALING 1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REP1, RSF1}, DDC (dopa decarboxylase) [NCBI Gene 1644] {aka AADC}
- **Diseases:** DDC (MESH:C537437)
- **Chemicals:** L-ornithine (MESH:D009952), L-threo-3-methylaspartate (-), ozone (MESH:D010126), trimethyllysine (MESH:C003712), proanthocyanidins (MESH:D044945), Amino acids (MESH:D000596), PAR (MESH:C028398), L-aspartic acid (MESH:D001224), lignans (MESH:D017705), carbohydrate (MESH:D002241), fatty acids (MESH:D005227), monoterpene (MESH:D039821), L-Phe (MESH:D010649), phenylpropane (MESH:C024268), L-glutamine (MESH:D005973), cytokinins (MESH:D003583), ATP (MESH:D000255), lignin (MESH:D008031), cinnamyl alcohol (MESH:C020722), tryptophan (MESH:D014364), anthocyanin (MESH:D000872), L-lysine (MESH:D008239), calcium (MESH:D002118), ROS (MESH:D017382), flavonoid (MESH:D005419), methanol (MESH:D000432), ABA (MESH:D000040), L-methionine (MESH:D008715), salicylic acid (MESH:D020156), aromatic amino acid (MESH:D024322), nitrogen (MESH:D009584), L-saccharopine (MESH:C100169), TCA (MESH:D014233), lalanine (MESH:D000409), carotenoids (MESH:D002338), L-Tyr (MESH:D014443), thioglucoside (MESH:D013863), terpenes (MESH:D013729), terpenoid indole alkaloids (MESH:D046948), cinnamaldehyde (MESH:C012843), phenolic acids (MESH:C017616), alkaloids (MESH:D000470), indole alkaloids (MESH:D026121), 5-Oxo-L-proline (MESH:D011761)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Betula platyphylla (Asian white birch, species) [taxon 78630], Fagopyrum esculentum (common buckwheat, species) [taxon 3617], Rhododendron aureum (species) [taxon 184574], Prunus persica (peach, species) [taxon 3760], Phoenix dactylifera (date palm, species) [taxon 42345], Mirabilis himalaica (species) [taxon 482968], Apium graveolens Dulce Group (celery, no rank) [taxon 117781], Leptobryum pyriforme (species) [taxon 41854]

## Full text

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## Figures

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## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12952582/full.md

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Source: https://tomesphere.com/paper/PMC12952582