# Optimization of lytic herpes simplex virus infection in human induced pluripotent stem cell-derived cortical neurones

**Authors:** Daniel A. Nash, Alex S. Nicholson, Henry G. Barrow, Viv Connor, Colin M. Crump, Janet E. Deane, Stephen C. Graham

PMC · DOI: 10.1099/jgv.0.002237 · The Journal of General Virology · 2026-03-02

## TL;DR

This study shows how human stem cell-derived neurons can be used to study HSV-1 infection, offering a scalable model for understanding viral replication in the brain.

## Contribution

The paper introduces an optimized protocol for HSV-1 infection in human cortical neurons derived from induced pluripotent stem cells.

## Key findings

- i3Neurones support the full HSV-1 lytic replication cycle.
- An optimized infection protocol achieves near-100% synchronous infection efficiency.
- Fixation methods preserve neuronal structure for detailed analysis.

## Abstract

Herpes simplex virus (HSV)-1 infection of cortical neurones is a leading cause of encephalitis. Whilst we have substantial knowledge about the molecular virology of HSV-1 lytic infection in cells of the periphery, like keratinocytes or fibroblasts, we know much less about infection of human neurones owing to the challenges of working with neuronal cell-based models. Here, we demonstrate the use of a human induced pluripotent stem cell-derived cortical neurone model (i3Neurones) for HSV-1 infection. i3Neurones are highly scalable and can be rapidly and efficiently differentiated into an isogenic population of cortical glutamatergic neurones. We show that i3Neurones support the full HSV-1 lytic replication cycle. We present an optimized protocol for the infection of i3Neurones with HSV-1 that allows their synchronous infection at near-100% efficiency and optimized fixation methods that preserve organelle and neurite structure for immunocytochemistry analysis. Our study highlights i3Neurones as a robust, scalable platform for microscopy and biochemical studies of HSV-1 and other neurotropic pathogens.

## Linked entities

- **Diseases:** encephalitis (MONDO:0019956)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, RBFOX3 (RNA binding fox-1 homolog 3) [NCBI Gene 146713] {aka FOX-3, FOX3, HRNBP3, NEUN}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, SLC17A7 (solute carrier family 17 member 7) [NCBI Gene 57030] {aka BNPI, VGLUT1}, CUX1 (cut like homeobox 1) [NCBI Gene 1523] {aka CASP, CDP, CDP/Cut, CDP1, COY1, CUTL1}, RPLP2 (ribosomal protein lateral stalk subunit P2) [NCBI Gene 6181] {aka D11S2243E, LP2, P2, RPP2}, NTF3 (neurotrophin 3) [NCBI Gene 4908] {aka HDNF, NGF-2, NGF2, NT-3, NT3}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, NEUROG3 (neurogenin 3) [NCBI Gene 50674] {aka Atoh5, Math4B, NGN-3, bHLHa7, ngn3}, NEUROG2 (neurogenin 2) [NCBI Gene 63973] {aka Atoh4, Math4A, NGN2, bHLHa8, ngn-2}, RL2 [NCBI Gene 2703390], POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460] {aka OCT3, OCT4, OCT4Borf1, OTF-3, OTF3, OTF4}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, NT-3 [NCBI Gene 4877], NGF (nerve growth factor) [NCBI Gene 4803] {aka Beta-NGF, HSAN5, NGFB}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, GOPC (golgi associated PDZ and coiled-coil motif containing) [NCBI Gene 57120] {aka CAL, FIG, GOPC1, PIST, dJ94G16.2}, TGOLN2 (trans-golgi network protein 2) [NCBI Gene 10618] {aka TGN38, TGN46, TGN48, TGN51, TTGN2, hTGN46}
- **Diseases:** HSE (MESH:D020803), Neurones (MESH:D009410), Oropouche virus infection (MESH:D002044), neurological sequelae (MESH:D009422), viral encephalitis (MESH:D018792), Zika virus (MESH:D000071243), Neuronal virus infections (MESH:D014777), HSV-1 infection (MESH:D006561), LUHMES (MESH:D020295), infected (MESH:D007239), encephalitis (MESH:D004660), microcephaly (MESH:D008831), neuroblastoma (MESH:D009447), neurodegenerative diseases (MESH:D019636), acute flaccid paralysis (MESH:C000629404), cancer (MESH:D009369), Guillain-Barre syndrome (MESH:D020275), ocular and osteoskeletal abnormalities (MESH:D005124)
- **Chemicals:** sucrose (MESH:D013395), l-glutamine (MESH:D005973), glyoxal (MESH:D006037), CO2 (MESH:D002245), citrate (MESH:D019343), CMC (MESH:D002266), SB431542 (MESH:C459179), PIPES (MESH:C008916), saponin (MESH:D012503), DAPI (MESH:C007293), nitric acid (MESH:D017942), DMSO (MESH:D004121), formaldehyde (MESH:D005557), glucose (MESH:D005947), cellulose (MESH:D002482), PLO (MESH:C008973), TBS-T (MESH:C027647), TWEEN (MESH:D011136), PBS (MESH:D007854), KCl (MESH:D011189), SU5402 (MESH:C105686), HEPES (MESH:D006531), mitomycin C (MESH:D016685), glycerol (MESH:D005990), 5-fluorodeoxyuridine (MESH:D005467), Propidium iodide (MESH:D011419), Chroman1 (-), 2-mercaptoethanol (MESH:D008623), TBS (MESH:D013725), CHIR99021 (MESH:C473711), fluorite (MESH:D002124), hygromycin B (MESH:D006921), sodium azide (MESH:D019810), water (MESH:D014867), NaOH (MESH:D012972), toluidine blue (MESH:D014048), ethanol (MESH:D000431), acetic acid (MESH:D019342), SDS (MESH:D012967), blasticidin (MESH:C004500), nitrate (MESH:D009566), NaCl (MESH:D012965), methanol (MESH:D000432), doxycycline (MESH:D004318), MgCl2 (MESH:D015636), LDN193189 (MESH:C554430), Triton X-100 (MESH:D017830), hygromycin (MESH:C026273), N2 (MESH:D009584), F-12 (MESH:C007782), EDTA (MESH:D004492)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mycoplasma (genus) [taxon 2093], Enterovirus A71 (no rank) [taxon 39054], Zika virus (no rank) [taxon 64320], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Enterovirus (genus) [taxon 12059], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), LUHMES — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_B056), U2OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042), T-REx — Homo sapiens (Human), Transformed cell line (CVCL_D585), HTB-96 — Mus musculus (Mouse), Hybridoma (CVCL_A8FQ)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12952538/full.md

## References

96 references — full list in the complete paper: https://tomesphere.com/paper/PMC12952538/full.md

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Source: https://tomesphere.com/paper/PMC12952538