# Development of silicon-fluorescein-based photolabile protecting groups with enhanced uncaging quantum yield

**Authors:** Naoya Ieda, Miyu Tachi, Misuzu Noda, Mei Harada, Yuji Hotta, Kazuki Kondo, Haruka Tsuchiya, Mikako Ogawa, Mitsuyasu Kawaguchi, Hidehiko Nakagawa

PMC · DOI: 10.1039/d5ra09470d · RSC Advances · 2026-03-02

## TL;DR

Researchers developed a new type of light-sensitive molecule that works efficiently with orange light, enabling better control of biological processes.

## Contribution

A new class of photolabile protecting groups with significantly improved uncaging efficiency at biocompatible wavelengths.

## Key findings

- The new PPGs achieved a 70-fold increase in uncaging efficiency compared to conventional systems.
- The design strategy was validated through successful application in a photoactivatable vasodilator prodrug.
- Quantum-chemical predictions were effectively combined with molecular design to enhance performance.

## Abstract

Photolabile protecting groups (PPGs) that respond to visible light are valuable tools for spatiotemporal control of biological events. However, achieving high uncaging efficiency at biocompatible wavelengths remains a significant challenge. In this study, we report a new class of PPGs triggered by photoinduced electron transfer (PeT) and activated by orange light (ca. 600 nm), designed to overcome this limitation. Using a structure-based approach assisted by quantum-chemical calculations, we focused on minimizing the activation energy (ΔEa) of the bond cleavage step following PeT. By rationally tuning the picolinium cation and antenna moieties, we achieved significantly improved reaction quantum yields, surpassing conventional PeT-based systems operating in this window. These results were consistent with the predicted energetics of the post-PeT intermediates, validating our design strategy. The practical utility of the system was demonstrated through the design and synthesis of a photoactivatable prodrug of a vasodilator. Upon orange light irradiation, the compound induced vasodilation in a sustained and controllable manner. This work not only provides a new strategy for designing high-efficiency PPGs operating at biologically compatible wavelengths, but also highlights the importance of combining quantum-chemical predictions with molecular design. Furthermore, the generality of the approach suggests its applicability to other single-electron-driven reactions. We believe these findings open a new avenue for the rational development of visible-light-responsive molecular tools in chemical biology and photopharmacology.

Quantum chemistry-guided transition state stabilization of Si-fluorescein photolabile protecting groups achieved a 70-fold increase in uncaging efficiency, enabling the precise optomanipulation of biological events using orange light.

## Full-text entities

- **Genes:** Gucy1a1 (guanylate cyclase 1 soluble subunit alpha 1) [NCBI Gene 497757] {aka Gucy1a3, SGC}
- **Diseases:** toxicity (MESH:D064420)
- **Chemicals:** carboxylic acid (MESH:D002264), S7 (MESH:C026625), carbon (MESH:D002244), N-G-nitro-l-arginine methyl ester (MESH:D019331), BPc (MESH:C083788), cyclic GMP (MESH:D006152), trimethylsilyl bromide (MESH:C068554), acetic acid (MESH:D019342), BODIPY (MESH:C095489), xenon (MESH:D014978), NA (MESH:D009638), 13C (MESH:C000615229), NO (MESH:D009569), S6 (MESH:C012008), water (MESH:D014867), palladium (MESH:D010165), alkene (MESH:D000475), coumarin (MESH:C030123), heme (MESH:D006418), fluorescein (MESH:D019793), amine (MESH:D000588), NOs (MESH:D009614), DeltaG (-), porphyrin (MESH:D011166), HEPES (MESH:D006531), chloranil (MESH:D002703), 7-methoxycoumarin (MESH:C007929), flavin (MESH:C024132), reactive oxygen species (MESH:D017382), lithium bromide (MESH:C040949), DMSO (MESH:D004121), melanin (MESH:D008543), Reinecke's salt (MESH:C001818)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12951597/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12951597/full.md

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Source: https://tomesphere.com/paper/PMC12951597