# SH2scan: Mapping SH2 Domain-Ligand Binding Selectivity for Inhibitors and Degraders

**Authors:** Luis M. Gonzalez Lira, Jennifer K. Wolfe-Demarco, Alexander M. Clifford, Tuan D. Le, Ghadeer M. Khasawneh, Medhanie Kidane, Michelle Nguyen, Julia A. Najera, Gabriel Pallares, Nicole B. Servant, Jean A. Bernatchez

PMC · DOI: 10.1021/acs.jmedchem.5c02613 · Journal of Medicinal Chemistry · 2026-01-16

## TL;DR

The paper introduces SH2scan, a new platform to study how synthetic ligands bind to SH2 domains, helping design more selective drugs.

## Contribution

SH2scan is a novel high-throughput assay platform for quantifying ligand-SH2 domain interactions and their selectivity.

## Key findings

- SH2scan quantified ligand binding to over 80% of SH2 domains in the target class.
- The platform revealed unique selectivity profiles and dissociation constants for nine synthetic ligands.
- SH2scan can aid in designing selective compounds and discovering new molecular probes.

## Abstract

Drug discovery targeting
SH2 domains (key protein–protein
interaction modules) has been hampered by a lack of assay systems
evaluating synthetic ligand binding selectivity toward SH2 domains
to reduce potential off-target effects. In addition, the molecular
determinants for the synthetic ligand engagement to SH2 domains across
the target class have yet to be defined. Here, we developed SH2scan, a high-throughput competition binding assay platform
to quantify ligand-SH2 domain interactions, covering >80% of the
target
class. We uncovered unique binding selectivity profiles and quantified
a broad range of dissociation constants (K
Ds) for 9 synthetic ligands of SH2 domains from the scientific literature
with a range of reported primary targets. These results demonstrate
that SH2scan can be used to design more selective
compounds targeting the SH2 domains. The platform can be further leveraged
for the discovery of new molecular probes for the dissection of cellular
protein–protein interaction networks.

## Full-text entities

- **Genes:** SOCS2 (suppressor of cytokine signaling 2) [NCBI Gene 8835] {aka CIS2, Cish2, SOCS-2, SSI-2, SSI2, STATI2}, CRK (CRK proto-oncogene, adaptor protein) [NCBI Gene 1398] {aka CRKII, p38}, SH2B3 (SH2B adaptor protein 3) [NCBI Gene 10019] {aka IDDM20, LNK}, SHC3 (SHC adaptor protein 3) [NCBI Gene 53358] {aka N-Shc, NSHC, RAI, SHCC}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, GRB14 (growth factor receptor bound protein 14) [NCBI Gene 2888], INPPL1 (inositol polyphosphate phosphatase like 1) [NCBI Gene 3636] {aka OPSMD, SHIP2}, STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773] {aka IMD44, ISGF-3, P113, PTORCH3, STAT113}, INPP5D (inositol polyphosphate-5-phosphatase D) [NCBI Gene 3635] {aka SHIP, SHIP-1, SHIP1, SIP-145, hp51CN, p150Ship}, CISH (cytokine inducible SH2 containing protein) [NCBI Gene 1154] {aka BACTS2, CIS, CIS-1, G18, SOCS}, TNS2 (tensin 2) [NCBI Gene 23371] {aka C1-TEN, C1TEN, TENC1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, CBL (Cbl proto-oncogene) [NCBI Gene 867] {aka C-CBL, CBL2, FRA11B, NSLL, RNF55}, FER (FER tyrosine kinase) [NCBI Gene 2241] {aka PPP1R74, TYK3, p94-Fer}, GRB7 (growth factor receptor bound protein 7) [NCBI Gene 2886], SYK (spleen associated tyrosine kinase) [NCBI Gene 6850] {aka IMD82, p72-Syk}, ZAP70 (zeta chain of T cell receptor associated protein kinase 70) [NCBI Gene 7535] {aka ADMIO2, IMD48, SRK, STCD, STD, TZK}, SOCS4 (suppressor of cytokine signaling 4) [NCBI Gene 122809] {aka SOCS7}, PIK3R3 (phosphoinositide-3-kinase regulatory subunit 3) [NCBI Gene 8503] {aka p55, p55-GAMMA, p55PIK}, CRBN (cereblon) [NCBI Gene 51185] {aka MRT2, MRT2A}, GRB2 (growth factor receptor bound protein 2) [NCBI Gene 2885] {aka ASH, EGFRBP-GRB2, Grb3-3, MST084, MSTP084, NCKAP2}, MATK (megakaryocyte-associated tyrosine kinase) [NCBI Gene 4145] {aka CHK, CTK, HHYLTK, HYL, HYLTK, Lsk}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, STAT4 (signal transducer and activator of transcription 4) [NCBI Gene 6775] {aka DPMC, SLEB11}, VAV1 (vav guanine nucleotide exchange factor 1) [NCBI Gene 7409] {aka VAV}, PLCG2 (phospholipase C gamma 2) [NCBI Gene 5336] {aka APLAID, FCAS3, PLC-IV, PLC-gamma-2}, ITK (IL2 inducible T cell kinase) [NCBI Gene 3702] {aka EMT, LPFS1, LYK, PSCTK2}, GRAP2 (GRB2 related adaptor protein 2) [NCBI Gene 9402] {aka GADS, GRAP-2, GRB2L, GRBLG, GRID, GRPL}, VAV3 (vav guanine nucleotide exchange factor 3) [NCBI Gene 10451], PTPN6 (protein tyrosine phosphatase non-receptor type 6) [NCBI Gene 5777] {aka HCP, HCPH, HPTP1C, PTP-1C, SH-PTP1, SHP-1}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, TNS1 (tensin 1) [NCBI Gene 7145] {aka MST091, MST122, MST127, MSTP091, MSTP122, MSTP127}, TNS3 (tensin 3) [NCBI Gene 64759] {aka TEM6, TENS1}, FYN (FYN proto-oncogene, Src family tyrosine kinase) [NCBI Gene 2534] {aka SLK, SYN, p59-FYN}, HSH2D (hematopoietic SH2 domain containing) [NCBI Gene 84941] {aka ALX, HSH2}, STAT5B (signal transducer and activator of transcription 5B) [NCBI Gene 6777] {aka GHISID2, STAT5}, SOCS7 (suppressor of cytokine signaling 7) [NCBI Gene 30837] {aka NAP4, NCKAP4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TNS4 (tensin 4) [NCBI Gene 84951] {aka CTEN, PP14434}, GRAP (GRB2 related adaptor protein) [NCBI Gene 10750] {aka DFNB114}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, CSK (C-terminal Src kinase) [NCBI Gene 1445]
- **Diseases:** CIPRES (MESH:D014947), inflammatory (MESH:D007249), cancer (MESH:D009369)
- **Chemicals:** M-PER (-), phosphopeptide (MESH:D010748), 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid (MESH:D006531), phosphotyrosine (MESH:D019000), TFA (MESH:D014269), Tween 20 (MESH:D011136), caffeic acid (MESH:C040048), DMSO (MESH:D004121), NaCl (MESH:D012965), Ac (MESH:D000186), EDTA (MESH:D004492), biotin (MESH:D001710), DTT (MESH:D004229)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** N567K, D661Y, N647I, Y640F, E616del, S614R
- **Cell lines:** HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12951562/full.md

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12951562/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12951562/full.md

---
Source: https://tomesphere.com/paper/PMC12951562