# From structure to therapy: two novel bacteriophages from swine wastewater with divergent genomes converge in combating Escherichia coli and Salmonella infections

**Authors:** Liyuan Zhang, Yuqi Zhou, Di Li, Xiaojing Zhuo, Shuang Li, Shaoshuai Ma, Ziyi Zhang, Wenqi Su, Ting Rong Luo, Hongyun Zhang, Jingjing Liang, Xiaoning Li

PMC · DOI: 10.3389/fmicb.2026.1763662 · Frontiers in Microbiology · 2026-02-16

## TL;DR

Two new bacteriophages from pig wastewater effectively fight E. coli and Salmonella, showing promise for phage-based therapies.

## Contribution

Isolation and characterization of two unrelated phages with distinct genomes but similar antibacterial efficacy.

## Key findings

- Both phages are stable in a wide temperature and pH range and lack toxin or antibiotic resistance genes.
- They demonstrate rapid bacterial killing and can enhance antibiotic activity in food and mouse models.
- The phages highlight functional redundancy and adaptability in phage ecosystems.

## Abstract

Swine wastewater, characterized by a high bacterial density and significant pressure on antibiotic selection, serves as a distinct reservoir for various bacteriophages. In this study, we report the simultaneous isolation and identification of two novel bacteriophages, vB_EcoM_BYEP01 and vB_SalS_SP14, from a single pig wastewater sample. These phages specifically target original host strain Escherichia coli BYEC01 and Salmonella enterica ATCC 14028, respectively. Both phages exhibit activity within the temperature range of 30–50 °C and remain stable over a pH range of 6–10. Transmission electron microscopy revealed that vB_EcoM_BYEP01 belongs to the Myoviridae family and vB_SalS_SP14 to Microviridae. Whole-genome sequencing and comparative analyses further confirmed these phylogenetic differences. Notably, despite these significant structural and genomic differences, both bacteriophages demonstrated efficient lytic life cycles. They lack genes associated with toxins or antibiotic resistance, while demonstrating biological safety. They share key functional characteristics, including rapid adsorption rates, short incubation periods, and large outbreak sizes, highlighting their efficacy as potent bacterial killers. Both bacteriophages can be combined with antibiotics to enhance antibacterial activity and demonstrate protective effects in food (such as milk and pig skin) and mouse infection models. The coexistence of these unrelated yet highly effective bacteriophages within a single microenvironment highlights the inherent functional redundancy and evolutionary adaptability of bacteriophages. This study provides valuable insights for developing targeted phage cocktail therapies against multiple bacterial pathogens.

## Linked entities

- **Diseases:** Escherichia coli infections (MONDO:0020920)
- **Species:** Escherichia coli (taxon 562), Salmonella enterica (taxon 28901), Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** bacterial (MESH:D001424), sepsis (MESH:D018805), typhoidal (MESH:D014435), dislocation (MESH:D004204), deaths (MESH:D003643), XL (MESH:D000080345), E. coli infection (MESH:D004927), toxicity (MESH:D064420), infection (MESH:D007239), diarrhea (MESH:D003967), vomiting (MESH:D014839), fever (MESH:D005334), foodborne illnesses (MESH:D005517), Salmonella infection (MESH:D012480)
- **Chemicals:** Ampicillin (MESH:D000667), EcoM_BYEP01 (-), uranyl acetate (MESH:C005460), Sulfafurazole (MESH:D013444), water (MESH:D014867), NaCl (MESH:D012965), cGMP (MESH:D006152), agar (MESH:D000362)
- **Species:** Gallus gallus (bantam, species) [taxon 9031], Bacteriophage sp. (species) [taxon 38018], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Salmonella enterica (species) [taxon 28901], Sus scrofa (pig, species) [taxon 9823], Escherichia coli (E. coli, species) [taxon 562], Myoviridae [taxon 10662], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12951479/full.md

## References

34 references — full list in the complete paper: https://tomesphere.com/paper/PMC12951479/full.md

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Source: https://tomesphere.com/paper/PMC12951479