# EBF1 regulates sensory establishment in the cochlea by positioning the medial boundary of the prosensory domain and restricting proliferation of the sensory progenitor population

**Authors:** Kathryn G. Powers, Joshua Hahn, Juliette Wohlschlegel, Olivia Bermingham-McDonogh

PMC · DOI: 10.1242/dev.205207 · Development (Cambridge, England) · 2026-02-12

## TL;DR

This study shows how EBF1 controls the development of sensory cells in the mouse cochlea by setting boundaries and limiting cell proliferation.

## Contribution

The paper reveals a new role for EBF1 in cochlear development through multiome sequencing and immunostaining.

## Key findings

- EBF1 positions the medial boundary of the prosensory domain by regulating Prdm16, Jag1, and Sox2.
- EBF1 restricts sensory progenitor proliferation by repressing Ccnjl expression.
- Loss of EBF1 leads to ectopic sensory patches and increased sensory cells in the cochlea.

## Abstract

In our previous study, we reported that Ebf1 excision throughout the inner ear epithelium and before the onset of cochlear development leads to dramatic sensory expansion in the cochlea by neonatal stages. Ebf1 conditional knockout cochleae possess over twice as many sensory cells as littermate controls and develop ectopic sensory patches in their Kölliker's organs. To better understand the mechanism behind the role of EBF1 in restricting sensory establishment, we performed multiome sequencing in our current study. EBF1 is a transcription factor best known for its importance in B cell lineage specification, during which it acts as both an activator and a repressor. Our results indicate that in mice EBF1 prevents the Kölliker's organ cells from being recruited to the prosensory domain by promoting expression of Prdm16 and repressing expression of Jag1 and Sox2. We also found that EBF1 may promote cell cycle exit by repressing Ccnjl expression. In summary, medial expansion of the prosensory domain, together with delayed cell cycle exit in the developing cochlear epithelium, underlies the robust increase in sensory cells seen in Ebf1 conditional knockouts.

Summary: Immunostaining and multiome sequencing indicate that EBF1 regulates sensory establishment by both positioning the medial boundary of the prosensory domain and restricting the proliferative capacity of the sensory progenitor pool.

## Linked entities

- **Genes:** EBF1 (EBF transcription factor 1) [NCBI Gene 1879], PRDM16 (PR/SET domain 16) [NCBI Gene 63976], JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182], SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657], CCNJL (cyclin J like) [NCBI Gene 79616]
- **Proteins:** EBF1 (EBF transcription factor 1)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CCNJL (cyclin J like) [NCBI Gene 79616], SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182] {aka AGS, AGS1, AHD, AWS, CD339, CMT2HH}, EBF1 (EBF transcription factor 1) [NCBI Gene 1879] {aka COE1, EBF, O/E-1, OLF1}, PRDM16 (PR/SET domain 16) [NCBI Gene 63976] {aka CMD1LL, KMT8F, LVNC8, MEL1, PFM13}

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12951292/full.md

## References

90 references — full list in the complete paper: https://tomesphere.com/paper/PMC12951292/full.md

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Source: https://tomesphere.com/paper/PMC12951292