# RPL28 mediates sorafenib resistance in hepatocellular carcinoma by downregulating CDC6 expression

**Authors:** Yi Shi, Fangfang Chen, Yuanyuan Weng, Hang Zeng, Gang Chen

PMC · DOI: 10.3389/fonc.2026.1741406 · Frontiers in Oncology · 2026-02-16

## TL;DR

This study shows that RPL28 helps liver cancer cells resist the drug sorafenib by increasing CDC6 levels, offering a new target for treatment.

## Contribution

The study identifies RPL28 as a novel mediator of sorafenib resistance in HCC through its regulation of CDC6.

## Key findings

- RPL28 knockdown reduced proliferation and migration in sorafenib-resistant HCC cells.
- Transcriptomic and proteomic analyses revealed CDC6 as a key downstream target of RPL28.
- RPL28 modulates DNA replication, immune regulation, and metabolic adaptation pathways.

## Abstract

Sorafenib is a milestone targeted therapy for advanced hepatocellular carcinoma (HCC), yet resistance to this agent severely limits its clinical efficacy. The molecular mechanisms underlying sorafenib resistance are incompletely understood. Ribosomal proteins (RPs) have been increasingly implicated in cancer progression and drug resistance, but the role and mechanism of ribosomal protein L28 (RPL28) in sorafenib resistance in HCC remains unexplored.

We investigated the functional role of RPL28 in sorafenib-resistant HCC using HepG2 and HCCLM3 cell models. RPL28 was silenced by siRNA, and effects on cell proliferation, and migration were assessed by CCK-8 and migration assays. Integrated transcriptomic and proteomic analyses were performed to delineate downstream pathways. The expression of immune-related proteins and key targets was validated by Western blotting.

RPL28 expression was significantly reduced at both mRNA and protein levels in knockdown cells of sorafenib-resistant HepG2 and HCCLM3. RPL28 knockdown inhibited proliferation and migration in resistant HCC cells. Transcriptomic and proteomic analyses identified CDC6 as a key downstream target of RPL28. CDC6 expression was consistently decreased in RPL28 KD cells, while EGFR and TRAF6 remained unchanged. GO and KEGG pathway enrichment revealed that RPL28 modulates pathways involved in DNA replication, immune regulation, and metabolic adaptation. Notably, no significant changes were observed in MHC-I and PD-L1 expression following RPL28 knockdown.

Our findings demonstrate that RPL28 contributes to sorafenib resistance in HCC by upregulating CDC6, contributing to tumor proliferation and drug resistance. The newly identified RPL28-CDC6 axis represents a novel mechanism of resistance and a potential therapeutic target to overcome treatment limitations in HCC.

## Linked entities

- **Genes:** RPL28 (ribosomal protein L28) [NCBI Gene 6158], CDC6 (cell division cycle 6) [NCBI Gene 990], EGFR (epidermal growth factor receptor) [NCBI Gene 1956], TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189], MHC-I (BOLA class I histocompatibility antigen, alpha chain BL3-7) [NCBI Gene 100009719], CD274 (CD274 molecule) [NCBI Gene 29126]
- **Chemicals:** sorafenib (PubChem CID 216239)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), HCC (MONDO:0007256)

## Full-text entities

- **Genes:** RPL28 (ribosomal protein L28) [NCBI Gene 6158] {aka L28, eL28}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, RPL11 (ribosomal protein L11) [NCBI Gene 6135] {aka DBA7, GIG34, L11, uL5}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, GPAM (glycerol-3-phosphate acyltransferase, mitochondrial) [NCBI Gene 57678] {aka GPAT, GPAT1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, RPL5 (ribosomal protein L5) [NCBI Gene 6125] {aka L5, MSTP030, PPP1R135, uL18}, TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189] {aka MGC:3310, RNF85}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, RPL22L1 (ribosomal protein L22 like 1) [NCBI Gene 200916], CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CDC6 (cell division cycle 6) [NCBI Gene 990] {aka CDC18L, HsCDC18, HsCDC6, MGORS5}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}
- **Diseases:** hypoxia (MESH:D000860), inflammation (MESH:D007249), cancer (MESH:D009369), ovarian cancer (MESH:D010051), HCC (MESH:D006528), gastrointestinal bleeding (MESH:D006471), viral infection (MESH:D014777), hypertension (MESH:D006973)
- **Chemicals:** phospholipid (MESH:D010743), CCK-8 (MESH:D012844), BAY 43-9006 (MESH:D000077157), SDS (MESH:D012967), cholesterol (MESH:D002784), streptomycin (MESH:D013307), steroid (MESH:D013256), CO2 (MESH:D002245), lenvatinib (MESH:C531958), lipid (MESH:D008055), PVDF (MESH:C024865), tryptophan (MESH:D014364), DMEM (-), sodium (MESH:D012964), penicillin (MESH:D010406)
- **Species:** Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), HCCLM3 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_6832), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), CTCC-0105 — Homo sapiens (Human), Human papillomavirus-independent cervical squamous cell carcinoma, Cancer cell line (CVCL_VT59)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12951193/full.md

## References

22 references — full list in the complete paper: https://tomesphere.com/paper/PMC12951193/full.md

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Source: https://tomesphere.com/paper/PMC12951193