# In Vitro retinal ganglion cell differentiation and enrichment under the scope: do subtypes matter?

**Authors:** Tahani W. Baakdhah, Jeremy M. Sivak

PMC · DOI: 10.3389/fcell.2025.1750142 · Frontiers in Cell and Developmental Biology · 2026-02-16

## TL;DR

This paper reviews the diversity of retinal ganglion cells in human retinas and how stem cell models can help study and treat diseases like glaucoma.

## Contribution

The paper provides a synthesis of human retinal ganglion cell subtypes and their relevance to stem cell differentiation and glaucoma research.

## Key findings

- Human retinal ganglion cells have distinct subtypes with specific markers and vulnerabilities.
- Current stem cell differentiation protocols poorly reflect the diversity of RGC subtypes.
- Understanding RGC diversity could improve models for studying glaucoma and developing cell replacement therapies.

## Abstract

Retinal ganglion cells (RGCs) play a pivotal part transmitting visual data to the brain. Yet, damaged RGCs are unable to maintain and regrow axons and connectivity, as in the common blinding disease glaucoma. Thus, the idea of rescuing and replacing damaged RGCs holds immense therapeutic potential. In recent years pluripotent stem cells cultured in both 2D and 3D (retinal organoid) environments have generated RGCs from healthy- and patient-derived cells. These models can be used to study normal retinal physiology and compare it to the diseased retina. Although the effects of glaucomatous injuries on RGCs have been well-studied in animal models, much less is known about similar mechanisms in the human retina. Further, using in vitro-derived RGCs as a tool for cell characterization and replacement is still in its infancy. In particular, many distinct RGC subtypes have been described, and it remains unclear how well this diversity is reflected in the various differentiation protocols, or their functional roles in human health and disease. In this review we summarize the currently described subtypes of human RGCs and their markers and discuss recent evidence for subtype-specific vulnerabilities to injury and disease. Finally, we synthesize the limited evidence for subtype differentiation in human stem cell culture approaches. Increased understanding of this human RGC diversity will provide new tools to enrich for selective subtypes and ultimately fill key translational gaps in human glaucoma research.

## Linked entities

- **Diseases:** glaucoma (MONDO:0005041)

## Full-text entities

- **Genes:** PANX1 (pannexin 1) [NCBI Gene 24145] {aka MRS1, OOMD7, OZEMA7, PX1, UNQ2529}, MAP3K1 (mitogen-activated protein kinase kinase kinase 1) [NCBI Gene 4214] {aka MAPKKK1, MEKK, MEKK 1, MEKK1, SRXY6}, PAEP (progestagen associated endometrial protein) [NCBI Gene 5047] {aka GD, GdA, GdF, GdS, PAEG, PEP}, RLBP1 (retinaldehyde binding protein 1) [NCBI Gene 6017] {aka CRALBP}, ISL1 (ISL LIM homeobox 1) [NCBI Gene 3670] {aka ISLET1, Isl-1}, THY1 (Thy-1 cell surface antigen) [NCBI Gene 7070] {aka CD90, CDw90}, CA8 (carbonic anhydrase 8 (inactive)) [NCBI Gene 767] {aka CA-RP, CA-VIII, CALS, CAMRQ3, CARP, SCAR34}, PAX6 (paired box 6) [NCBI Gene 5080] {aka AN, AN1, AN2, ASGD5, D11S812E, FVH1}, CALB2 (calbindin 2) [NCBI Gene 794] {aka CAB29, CAL2, CR}, VEZF1 (vascular endothelial zinc finger 1) [NCBI Gene 7716] {aka CMD1OO, DB1, ZNF161}, CALB1 (calbindin 1) [NCBI Gene 793] {aka CALB, D-28K}, GUCY1A1 (guanylate cyclase 1 soluble subunit alpha 1) [NCBI Gene 2982] {aka GC-S-alpha-1, GC-SA3, GCS-alpha-3, GUC1A3, GUCA3, GUCSA3}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, CAMK2G (calcium/calmodulin dependent protein kinase II gamma) [NCBI Gene 818] {aka CAMK, CAMK-II, CAMKG, MRD59}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, RBPMS (RNA binding protein, mRNA processing factor) [NCBI Gene 11030] {aka HERMES}, MEIS2 (Meis homeobox 2) [NCBI Gene 4212] {aka CPCMR, HsT18361, MRG1}, ATOH7 (atonal bHLH transcription factor 7) [NCBI Gene 220202] {aka Math5, NCRNA, PHPVAR, RNANC, bHLHa13}, Igf1 (insulin-like growth factor 1) [NCBI Gene 24482] {aka IGF}, OPTN (optineurin) [NCBI Gene 10133] {aka ALS12, FIP2, GLC1E, HIP7, HYPL, NRP}, SIX6 (SIX homeobox 6) [NCBI Gene 4990] {aka MCOPCT2, ODRMD, OPTX2, Six9}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, Isl1 (ISL LIM homeobox 1) [NCBI Gene 64444] {aka Isl-1, isl-1=homeobox}, Wnt2 (Wnt family member 2) [NCBI Gene 114487] {aka Wnt}, SATB2 (SATB homeobox 2) [NCBI Gene 23314] {aka C2DELq32q33, DEL2Q32Q33, GLSS}, CHAT (choline O-acetyltransferase) [NCBI Gene 1103] {aka CHOACTASE, CMS1A, CMS1A2, CMS6}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, CAMK2B (calcium/calmodulin dependent protein kinase II beta) [NCBI Gene 816] {aka CAM2, CAMK2, CAMKB, CaMKIIbeta, MRD54}, POU4F2 (POU class 4 homeobox 2) [NCBI Gene 5458] {aka BRN3.2, BRN3B, Brn-3b}, TBR1 (T-box brain transcription factor 1) [NCBI Gene 10716] {aka AUTS5, IDDAS, TBR-1, TES-56}, BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, RBPMS2 (RNA binding protein, mRNA processing factor 2) [NCBI Gene 348093], OPN4 (opsin 4) [NCBI Gene 94233] {aka MOP}, VSX2 (visual system homeobox 2) [NCBI Gene 338917] {aka CHX10, HOX10, MCOP2, MCOPCB3, RET1}, TPBG (trophoblast glycoprotein) [NCBI Gene 7162] {aka 5T4, 5T4AG, M6P1, WAIF1}, SATB1 (SATB homeobox 1) [NCBI Gene 6304] {aka DEFDA, DHDBV, KTZSL}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, POU4F1 (POU class 4 homeobox 1) [NCBI Gene 5457] {aka ATITHS, BRN3A, Oct-T1, RDC-1, brn-3A}, SNCG (synuclein gamma) [NCBI Gene 6623] {aka BCSG1, SR}, KCNG4 (potassium voltage-gated channel modifier subfamily G member 4) [NCBI Gene 93107] {aka KV6.3, KV6.4}, CHRNA2 (cholinergic receptor nicotinic alpha 2 subunit) [NCBI Gene 1135]
- **Diseases:** blindness (MESH:D001766), open-angle glaucoma (MESH:D005902), ischemic (MESH:D002545), optic atrophy (MESH:D009896), MG (MESH:C537370), vision loss (MESH:D014786), inherited mitochondrial disorders (MESH:D028361), optic nerve injury (MESH:D020221), glaucomatous injuries (MESH:D014947), degenerative disease (MESH:D019636), glaucoma (MESH:D005901), retinal diseases (MESH:D012164), LGN (MESH:D016697), ocular hypertension (MESH:D009798), RGC degeneration (MESH:D012162), Leber hereditary optic neuropathy (MESH:D029242), RGC (MESH:D012173), ischemic optic neuropathies (MESH:D018917)
- **Chemicals:** GABA (MESH:D005680), glutamate (MESH:D018698), dorsomorphin (MESH:C516138), calcium (MESH:D002118), SB431542 (MESH:C459179), ATP (MESH:D000255), retinoic acid (MESH:D014212), Ca 2+ (-)
- **Species:** Macaca (macaque, genus) [taxon 9539], Rhodopseudomonas faecalis (species) [taxon 99655], Callitrichinae sp. (species) [taxon 38020], Mus musculus (house mouse, species) [taxon 10090], Callithrix jacchus (common marmoset, species) [taxon 9483], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Rodentia (rodent, order) [taxon 9989], Felis catus (cat, species) [taxon 9685], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Cercopithecidae (monkey, family) [taxon 9527]
- **Mutations:** E50K
- **Cell lines:** HuC/D — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_IZ09)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12950791/full.md

## References

226 references — full list in the complete paper: https://tomesphere.com/paper/PMC12950791/full.md

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Source: https://tomesphere.com/paper/PMC12950791