# Pre-existing activation states shape functional heterogeneity of human Vγ9Vδ2 T cells

**Authors:** Anna Vyborova, Laia Gasull-Celades, Peter Brazda, Alberto Miranda Bedate, Froso Karaiskaki, Jasper Sanders, Anke Janssen, Trudy Straetemans, Dennis X. Beringer, Zsolt Sebestyen, Jürgen Kuball

PMC · DOI: 10.3389/fimmu.2026.1696469 · Frontiers in Immunology · 2026-02-16

## TL;DR

Human Vγ9Vδ2 T cells show functional diversity based on pre-existing activation states, which affects their potential for cancer immunotherapy.

## Contribution

The study reveals that functional heterogeneity in Vγ9Vδ2 T cells arises from pre-existing activation states rather than in vitro culture conditions.

## Key findings

- A substantial fraction of Vγ9Vδ2 T-cell clones exhibit a low-IFN-γ-releasing (LIR) profile with type 2-like effector function.
- Pre-existing activation states in Vγ9Vδ2 T cells are reflected in their in vivo transcriptomic profiles, with LIR-like states being prevalent.
- Effector differentiation in Vγ9Vδ2 T cells is influenced by intrinsic signaling features but not strictly determined by them.

## Abstract

γδ T cells gain increasing attention as carriers for tumor-targeting constructs in therapeutic contexts. However, the failure to fully account for the diversity within the subset has impeded its clinical use so far. We investigated the heterogeneity of the Vγ9Vδ2 T-cell compartment by profiling the function and gene expression of single-cell clones expanded in vitro using the rapid expansion protocol (REP), which involves repeated stimulation with interleukin (IL)-2 and IL-15. Generally known to enhance the type 1 effector program in the γδ T cells, these culture conditions polarized only a proportion of the adult peripheral blood-derived clones toward “classic” type 1 effectors marked by high interferon gamma (IFN-γ) release (HIR). Unexpectedly, a substantial fraction of the clones exhibited a low-IFN-γ-releasing (LIR) profile and instead activated a type 2-like effector program, marked by IL-4 and IL-5 secretion and expression of the transcription factor GATA3. In line with this functional dichotomy, we observed coordinated transcriptional programs linking effector function to genes associated with T-cell activation, proliferation, and cytokine production. HIR clones exhibited a more activated transcriptional profile in culture compared with LIR clones. Importantly, projection of HIR and LIR gene signatures onto ex vivo single-cell transcriptomic data demonstrated that these effector states are already present in vivo as part of a continuous activation landscape within nonexpanded Vγ9Vδ2 T cells, with LIR-like states predominating in cord blood and remaining prevalent in adult peripheral blood. These findings indicate that the functional divergence observed after in vitro expansion reflects stabilization and amplification of preexisting activation states rather than culture-induced polarization. Analysis of the Vγ9Vδ2 T-cell receptor repertoire further suggested that intrinsic signaling features may modulate, but do not dictate, effector differentiation within this activation continuum. In summary, our data indicate that effector differentiation of Vγ9Vδ2 T cells is dominated by a preexisting LIR-like activation state, a finding with major implications for current γδ T-cell-based cancer immunotherapy strategies that rely on in vivo stimulation or ex vivo engineering.

## Linked entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458], IL4 (interleukin 4) [NCBI Gene 3565], IL5 (interleukin 5) [NCBI Gene 3567], GATA3 (GATA binding protein 3) [NCBI Gene 2625]
- **Diseases:** cancer (MONDO:0004992)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, CD96 (CD96 molecule) [NCBI Gene 10225] {aka TACTILE}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, IL15 (interleukin 15) [NCBI Gene 3600] {aka IL-15}, LGALS9 (galectin 9) [NCBI Gene 3965] {aka HUAT, LGALS9A}, TNFRSF9 (TNF receptor superfamily member 9) [NCBI Gene 3604] {aka 4-1BB, CD137, CDw137, ILA, IMD109}, TRDV2 (T cell receptor delta variable 2) [NCBI Gene 28517] {aka hDV102S1}, CXADRP1 (CXADR pseudogene 1) [NCBI Gene 653108] {aka CAR, CXADRP}, IL25 (interleukin 25) [NCBI Gene 64806] {aka IL17E}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, TNFSF13 (TNF superfamily member 13) [NCBI Gene 8741] {aka APRIL, CD256, TALL-2, TALL2, TNLG7B, TRDL-1}, BTN2A1 (butyrophilin subfamily 2 member A1) [NCBI Gene 11120] {aka BK14H9.1, BT2.1, BTF1, BTN2.1, DJ3E1.1}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, CXCR3 (C-X-C motif chemokine receptor 3) [NCBI Gene 2833] {aka CD182, CD183, CKR-L2, CMKAR3, GPR9, IP10-R}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, CST7 (cystatin F) [NCBI Gene 8530] {aka CMAP}, FOSB (FosB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2354] {aka AP-1, G0S3, GOS3, GOSB}, KLF2 (KLF transcription factor 2) [NCBI Gene 10365] {aka LKLF}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CD2 (CD2 molecule) [NCBI Gene 914] {aka LFA-2, SRBC, T11}, BTN3A2 (butyrophilin subfamily 3 member A2) [NCBI Gene 11118] {aka BT3.2, BTF4, BTN3.2, CD277}, EOMES (eomesodermin) [NCBI Gene 8320] {aka TBR2}, TNFRSF18 (TNF receptor superfamily member 18) [NCBI Gene 8784] {aka AITR, CD357, ENERGEN, GITR, GITR-D}, TNFSF10 (TNF superfamily member 10) [NCBI Gene 8743] {aka APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A}, FASLG (Fas ligand) [NCBI Gene 356] {aka ALPS1B, APT1LG1, APTL, CD178, CD95-L, CD95L}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170] {aka BCL2L3, EAT, MCL1-ES, MCL1L, MCL1S, Mcl-1}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, LTA (lymphotoxin alpha) [NCBI Gene 4049] {aka LT, TNFB, TNFSF1, TNLG1E}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, NFATC1 (nuclear factor of activated T cells 1) [NCBI Gene 4772] {aka NF-ATC, NF-ATc1.2, NFAT2, NFATc}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, ICOS (inducible T cell costimulator) [NCBI Gene 29851] {aka AILIM, CD278, CVID1}, LAP (Laryngeal adductor paralysis) [NCBI Gene 7939], IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, S1PR1 (sphingosine-1-phosphate receptor 1) [NCBI Gene 1901] {aka CD363, CHEDG1, D1S3362, ECGF1, EDG-1, EDG1}, IL17F (interleukin 17F) [NCBI Gene 112744] {aka CANDF6, IL-17F, ML-1, ML1}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, TNFSF14 (TNF superfamily member 14) [NCBI Gene 8740] {aka CD258, HVEML, LIGHT, LTg}, CCR3 (C-C motif chemokine receptor 3) [NCBI Gene 1232] {aka C C CKR3, CC-CKR-3, CD193, CKR 3, CKR3, CMKBR3}, IL5 (interleukin 5) [NCBI Gene 3567] {aka EDF, IL-5, TRF}, IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, TBX21 (T-box transcription factor 21) [NCBI Gene 30009] {aka IMD88, T-PET, T-bet, TBET, TBLYM}, CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, KCNJ4 (potassium inwardly rectifying channel subfamily J member 4) [NCBI Gene 3761] {aka HIR, HIRK2, HRK1, IRK-3, IRK3, Kir2.3}, TRD (T cell receptor delta locus) [NCBI Gene 6964] {aka TCRD, TCRDV1, TRD@}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, CCR4 (C-C motif chemokine receptor 4) [NCBI Gene 1233] {aka CC-CKR-4, CD194, CKR4, CMKBR4, ChemR13, HGCN:14099}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, BTLA (B and T lymphocyte associated) [NCBI Gene 151888] {aka BTLA1, CD272}, CD300C (CD300c molecule) [NCBI Gene 10871] {aka CLM-6, CMRF-35, CMRF-35A, CMRF35, CMRF35-A1, CMRF35A}
- **Diseases:** hematologic malignancies (MESH:D019337), REP (MESH:C564983), cancer (MESH:D009369), inflammatory (MESH:D007249), solid (MESH:D018250), cytotoxic (MESH:D064420)
- **Chemicals:** streptomycin (MESH:D013307), PAM (MESH:C028797), mevalonate (MESH:D008798), pyrophosphate (MESH:C107241), penicillin (MESH:D010406), DMEM (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** SSC9 — Sus scrofa (Pig), Finite cell line (CVCL_XC02), HL60 — Homo sapiens (Human), Adult acute myeloid leukemia with maturation, Cancer cell line (CVCL_0002), RPMI8226 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0014), HEK293FT — Homo sapiens (Human), Transformed cell line (CVCL_6911), Daudi — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_0008)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12950705/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12950705/full.md

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Source: https://tomesphere.com/paper/PMC12950705