# Mapping the RNA methylome under drought: techniques, mechanisms, and agricultural implications

**Authors:** Xiaoru Fan, Yong Zhang

PMC · DOI: 10.3389/fpls.2026.1766123 · Frontiers in Plant Science · 2026-02-16

## TL;DR

This paper explores how RNA methylation, especially m6A, helps plants respond to drought stress and could be used to develop more resilient crops.

## Contribution

The paper provides a comprehensive overview of RNA methylation mechanisms and their role in plant drought tolerance, highlighting m6A as a key regulatory factor.

## Key findings

- Water deficiency dynamically alters m6A RNA modification levels in plants.
- m6A modification affects transcript stability, translation efficiency, and physiological processes like stomatal movement and ROS signaling.
- Modulating m6A levels could be a strategy for developing drought-tolerant crops.

## Abstract

Drought stress is one of the most devastating threats to global agriculture. Understanding plant adaptation to water scarcity is of paramount importance for food security. In the last several years, epigenetic regulation, especially RNA methylation, has been shown to play an important role in post-transcriptional gene regulation in plant stress response. Here, we summarize recent advances in studying the epitranscriptomic mechanisms underlying plant drought tolerance. We will introduce various types of RNA modifications, provide an overview of “writer”, “eraser” and “reader” proteins mediating m6A modification in plant system, and discuss different technologies for detecting m6A and several other modifications including m5C, m1A, m3C, m7G and m1A with focus on principles and technical consideration. Finally, we will discuss evidence from multiple species to suggest that water deficiency can alter the abundance of m6A modification on RNA molecules in a dynamic manner. The modified transcripts go through differential stability, translation efficiency and process proficiency levels to regulate various physiological processes including but not limited to stomatal movement, ROS signaling and hormonal action. Furthermore, we will also highlight the possible means through which modulation of m6A level could be utilized for generating drought tolerant crops through genetic or biotechnological approaches. This analysis establishes RNA methylation, particularly m6A, as a pivotal and reversible regulatory mechanism in plant drought stress responses and identifies key future research avenues for both fundamental understanding and crop improvement.

## Full-text entities

- **Genes:** ECT8 (evolutionarily conserved C-terminal region 8) [NCBI Gene 844267] {aka evolutionarily conserved C-terminal region 8}, LTI78 (low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)) [NCBI Gene 835307] {aka COLD REGULATED 78, COR78, K24M7.4, K24M7_4, LOW-TEMPERATURE-INDUCED 78, LTI140}, CCR4 (CRINKLY4 related 4) [NCBI Gene 834836] {aka ATCRK1, CRINKLY4 related 4, MCA23.19, MCA23_19}, AT4G01880 (methyltransferase) [NCBI Gene 828223] {aka T7B11.14, T7B11_14}, MTA (mRNAadenosine methylase) [NCBI Gene 826670] {aka EMB1706, EMBRYO DEFECTIVE 1706, T12H20.6, T12H20_6, mRNAadenosine methylase}, COR47 (cold-regulated 47) [NCBI Gene 838632] {aka AtCOR47, F5M15.22, F5M15_22, RD17, cold-regulated 47}, AT3G06710 (E3 ubiquitin ligase) [NCBI Gene 819856] {aka T8E24.2}, FIP37 (FKBP12 interacting protein 37) [NCBI Gene 824584] {aka ATFIP37, FKBP12 interacting protein 37}
- **Diseases:** water deficiency (MESH:D003681), Drought (MESH:C536747), hepatocellular carcinoma (MESH:D006528), hypersensitivity (MESH:D004342), developmental defects (MESH:D000094602)
- **Chemicals:** N1-methyladenosine (MESH:C002230), nitrite (MESH:D009573), N6,2-O-dimethyladenosine (-), N7-methylguanine (MESH:C008450), poly (A) (MESH:D011061), 3-methylcytosine (MESH:C036386), bisulfite (MESH:C042345), iodine (MESH:D007455), lignin (MESH:D008031), N6 -Methyladenine (MESH:C005955), Glyoxal (MESH:D006037), CO2 (MESH:D002245), hydrazine (MESH:C029424), carbon (MESH:D002244), m7G (MESH:C016578), adenosine (MESH:D000241), inosine (MESH:D007288), ABA (MESH:D000040), T (MESH:D014316), aniline (MESH:C023650), S-adenosylmethionine (MESH:D012436), cytosine (MESH:D003596), 5-methylcytosine (MESH:D044503)
- **Species:** Homo sapiens (human, species) [taxon 9606], Avena sativa (cultivated oat, species) [taxon 4498], Zea mays (maize, species) [taxon 4577], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Camellia (genus) [taxon 4441], Solanum lycopersicum (tomato, species) [taxon 4081], Triticum aestivum (bread wheat, species) [taxon 4565], Drosophila melanogaster (fruit fly, species) [taxon 7227], Setaria italica (foxtail millet, species) [taxon 4555], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Solanum tuberosum (potatoes, species) [taxon 4113], Pyrus communis (pear, species) [taxon 23211], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Hippophae rhamnoides (sallowthorn, species) [taxon 193516], Malus domestica (apple, species) [taxon 3750], Nicotiana tabacum (American tobacco, species) [taxon 4097], Cajanus cajan (pigeon pea, species) [taxon 3821]
- **Mutations:** cytosine (C) to uracil (U)

## Full text

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## Figures

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## References

101 references — full list in the complete paper: https://tomesphere.com/paper/PMC12950681/full.md

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Source: https://tomesphere.com/paper/PMC12950681