# Companion Diagnostics in Clinical Therapy: Current Applications and Future Directions

**Authors:** Yuesong Wu, Rou Xue, Xiangwen Luo, Jiangnan Liao, Zongbo Zhang, Jinhai Deng, Teng Liu, Xin Li, Zhe‐Sheng Chen, Mingzhu Yin

PMC · DOI: 10.1002/mco2.70638 · MedComm · 2026-03-01

## TL;DR

Companion diagnostics help tailor cancer treatments to individual patients using biomarkers, improving effectiveness and reducing costs, but face challenges like test standardization and resistance mechanisms.

## Contribution

This review provides a comprehensive overview of CDx development, challenges, and future directions, emphasizing multiomics and AI integration.

## Key findings

- CDx is critical in oncology for targeting therapies based on biomarkers like EGFR and HER2.
- Challenges include tumor heterogeneity, test standardization, and economic barriers to co-development.
- Future trends involve AI, multiomics, and next-generation diagnostic platforms like liquid biopsies.

## Abstract

Companion diagnostics (CDx) plays a pivotal role in precision medicine by enabling personalized treatment plans based on individual biomarker profiles. This approach can enhance therapeutic efficacy in selected indications and may reduce healthcare expenditures. Particularly in oncology, precision targeted therapies targeting pathways such as EGFR, HER2, and programmed death‐1/programmed death‐ligand 1 have established robust models for biomarker‐driven treatment. However, rapid advancements in diagnostic technologies, expanding application scopes, and increasingly complex mechanisms of biomarker resistance are presenting new challenges for CDx. This review comprehensively examines the evolving regulatory landscape, current clinical applications across various solid tumors and hematologic malignancies, and diverse methodological platforms ranging from next‐generation sequencing and immunohistochemistry to emerging liquid biopsies and point‐of‐care testing. It also delves into persistent barriers in CDx development, including tumor heterogeneity, test standardization, trade‐offs between tissue biopsy and liquid biopsy, and the economic complexities of codevelopment and reimbursement mechanisms. By synthesizing existing knowledge and projecting future trends, this paper serves as a valuable resource for researchers, regulators, and clinicians. It provides critical insights to guide the synergistic development of drugs and diagnostics, paving the way for their integration into a more dynamic, artificial intelligence‐enhanced, and multiomics‐driven healthcare ecosystem.

Companion diagnostics use biomarker‐based assays to stratify patients for precision therapies, improving outcomes while reducing ineffective treatment and side effects. This review summarizes the evolution, regulatory landscape, clinical applications, and technological platforms of CDx, highlighting their role in biomarker‐driven precision therapy. It outlines current challenges and emphasizes future directions, including multiomics integration, AI‐enabled interpretation, and dynamic, next‐generation CDx development. Created with BioRender.

## Linked entities

- **Genes:** EGFR (epidermal growth factor receptor) [NCBI Gene 1956], ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064]

## Full-text entities

- **Genes:** NTN1 (netrin 1) [NCBI Gene 9423] {aka MRMV4, NET1, NTN1L}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, RET (ret proto-oncogene) [NCBI Gene 5979] {aka CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1}, NRF1 (nuclear respiratory factor 1) [NCBI Gene 4899] {aka ALPHA-PAL}, NTRK3 (neurotrophic receptor tyrosine kinase 3) [NCBI Gene 4916] {aka GP145-TrkC, TRKC, gp145(trkC)}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418] {aka D2HGA2, ICD-M, IDH, IDH-2, IDHM, IDP}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, FLT3 (fms related receptor tyrosine kinase 3) [NCBI Gene 2322] {aka CD135, FLK-2, FLK2, STK1}, LEPR (leptin receptor) [NCBI Gene 3953] {aka CD295, LEP-R, LEPRD, OB-R, OBR, huB219}, POMC (proopiomelanocortin) [NCBI Gene 5443] {aka ACTH, CLIP, LPH, MSH, NPP, OBAIRH}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, PCSK1 (proprotein convertase subtilisin/kexin type 1) [NCBI Gene 5122] {aka BMIQ12, NEC1, PC1, PC1/3, PC3, SPC3}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, NTRK2 (neurotrophic receptor tyrosine kinase 2) [NCBI Gene 4915] {aka DEE58, EIEE58, GP145-TrkB, OBHD, TRKB, trk-B}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, GPNMB (glycoprotein nmb) [NCBI Gene 10457] {aka HGFIN, NMB, PLCA3}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, SIAH2 (siah E3 ubiquitin protein ligase 2) [NCBI Gene 6478] {aka hSiah2}, CA6 (carbonic anhydrase 6) [NCBI Gene 765] {aka CA-VI, GUSTIN}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, TACSTD2 (tumor associated calcium signal transducer 2) [NCBI Gene 4070] {aka EGP-1, EGP1, GA733-1, GA7331, GP50, M1S1}, BRF1 (BRF1 general transcription factor IIIB subunit) [NCBI Gene 2972] {aka BRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, ALK (ALK receptor tyrosine kinase) [NCBI Gene 238] {aka ALK1, CD246, NBLST3}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, AXL (AXL receptor tyrosine kinase) [NCBI Gene 558] {aka ARK, AXL3, JTK11, Tyro7, UFO}, IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, ROS1 (ROS proto-oncogene 1, receptor tyrosine kinase) [NCBI Gene 6098] {aka MCF3, ROS, c-ros-1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, FGFR1 (fibroblast growth factor receptor 1) [NCBI Gene 2260] {aka BFGFR, CD331, CEK, ECCL, FGFBR, FGFR-1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, NTRK1 (neurotrophic receptor tyrosine kinase 1) [NCBI Gene 4914] {aka MTC, TRK, TRK1, TRKA, Trk-A, p140-TrkA}, MAFD2 (major affective disorder 2) [NCBI Gene 4096] {aka BPAD, MDI, MDX}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}
- **Diseases:** NSCLC (MESH:D002289), squamous cell carcinoma (MESH:D002294), nontransfusion-dependent thalassemia (MESH:D013789), hypoxia (MESH:D000860), aortic valve diseases (MESH:D000082862), aggressive systemic mastocytosis (MESH:D034721), solid (MESH:D018250), sepsis (MESH:D018805), metabolic dysfunction (MESH:D008659), AML (MESH:D015470), neurological disorders (MESH:D009461), necrosis (MESH:D009336), myelodysplastic syndromes (MESH:D009190), hematologic malignancies (MESH:D019337), HR deficiency (MESH:C535296), ML (MESH:D007859), positive (MESH:D000377), mycobacterium tuberculosis (MESH:D014376), tumorigenesis (MESH:D063646), ovarian cancer (MESH:D010051), sickle cell anemia (MESH:D000755), AI (MESH:C538142), MFDS (MESH:D000081015), cutaneous (MESH:D018366), obesity (MESH:D009765), lung adenocarcinoma (MESH:D000077192), breast cancer (MESH:D001943), kidney disease (MESH:D007674), TNBC (MESH:D064726), metastatic castrate resistant prostate cancer (MESH:D064129), autoimmune diseases (MESH:D001327), GC (MESH:D013274), cytotoxic (MESH:D064420), biliary tract cancer (MESH:D001661), liver cirrhosis (MESH:D008103), CML (MESH:D015464), hereditary red blood cell disorders (MESH:D025861), steatitis liver disease (MESH:D013231), epithelial tumors (MESH:D002277), fallopian tube cancer (MESH:D005185), Lyme disease (MESH:D008193), asthma (MESH:D001249), primary peritoneal cancer (MESH:D010534), lung cancer (MESH:D008175), cardiovascular disease (MESH:D002318), Alzheimer's disease (MESH:D000544), neuropsychiatric disorders (MESH:D001523), chromosomal abnormalities (MESH:D002869), Tumor (MESH:D009369), genetic anomalies (MESH:D020022), COVID-19 (MESH:D000086382), endometrial carcinoma (MESH:D016889), myelodysplastic syndrome/myeloproliferative (MESH:D054437), hematologic disorders (MESH:D006402), urothelial cancer (MESH:D014523), gastroesophageal junction (MESH:D008309), B-cell chronic lymphocytic leukemia (MESH:D015451), colorectal (MESH:D015179), EC (MESH:D005955), follicular lymphoma tumor (MESH:D008224)
- **Chemicals:** formalin (MESH:D005557), chloroquine (MESH:D002738), crizotinib (MESH:D000077547), capmatinib (MESH:C000613976), amivantamab (MESH:C000718215), nivolumab (MESH:D000077594), 18F-FES (MESH:C043436), iron (MESH:D007501), alectinib (MESH:C582670), lipopolysaccharide (MESH:D008070), imatinib (MESH:D000068877), atezolizumab (MESH:C000594389), Olaparib (MESH:C531550), Mivacurium chloride (MESH:D000077590), savolitinib (MESH:C000593259), ATP (MESH:D000255), afatinib (MESH:D000077716), enzalutamide (MESH:C540278), rucaparib (MESH:C531549), glutathione (MESH:D005978), erlotinib (MESH:D000069347), T-DM1 (MESH:D000080044), trastuzumab (MESH:D000068878), cetuximab (MESH:D000068818), 123I-MIBG (MESH:D019797), selpercatinib (MESH:C000656166), vintafolide (MESH:C520389), 18F-FDG (MESH:D019788), lipoteichoic acid (MESH:C009900), Vemurafenib (MESH:D000077484), cemiplimab (MESH:C000627974), gefitinib (MESH:D000077156), pembrolizumab (MESH:C582435), oxygen (MESH:D010100), osimertinib (MESH:C000596361), Exjade (MESH:D000077588), paraffin (MESH:D010232), CDx (-)
- **Species:** Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus (species) [taxon 12721]
- **Mutations:** T790M, G12C, 1799T>A, L718Q, L858R, G719A, D816V, L747S, AUC of 0
- **Cell lines:** SP263 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_B6L0)

## Full text

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## Figures

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## References

353 references — full list in the complete paper: https://tomesphere.com/paper/PMC12950518/full.md

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Source: https://tomesphere.com/paper/PMC12950518