# CRISPR-Cas9–based gene editing as a proof-of-concept approach in an inborn error of immunity caused by a DCLRE1C variant

**Authors:** Tugce Duran, Mehmet Ali Karaselek, Burak Dagdelen, Serkan Kuccukturk, Sükrü Nail Guner, Sevgi Keles, Ismail Reisli

PMC · DOI: 10.1007/s12026-026-09758-2 · Immunologic Research · 2026-02-28

## TL;DR

Researchers used CRISPR-Cas9 to correct a genetic mutation in immune cells, showing it's possible to fix the mutation but not fully restore normal function.

## Contribution

This is the first proof-of-concept study using CRISPR-Cas9 to correct a DCLRE1C variant in CD4+ T cells.

## Key findings

- CRISPR-Cas9 successfully restored the DCLRE1C gene to its wild-type sequence in CD4+ T cells.
- Editing led to increased CD25 activation and Artemis protein expression, though mRNA levels remained unchanged.
- The observed functional changes were statistically significant but did not reach levels seen in healthy controls.

## Abstract

Hypomorphic DCLRE1C variants impair T and B cell development, leading to combined immunodeficiency (CID) or leaky severe combined immunodeficiency (SCID). Current treatment options, such as allogeneic hematopoietic stem cell transplantation (aHSCT), are associated with significant risks, highlighting the need for alternative therapeutic strategies. In this study, we report the first a proof-of-concept CRISPR-Cas9–mediated correction of a hypomorphic DCLRE1C variant (c.194 C > T; p.T65I) in CD4 + helper T (Th) cells using CRISPR-Cas9 gene-editing technology. CD4 + Th cells were isolated, and the variant region was edited with sgRNA and donor DNA. Gene editing efficiency was confirmed by Sanger sequencing, revealing successful restoration of the target region to its wild-type sequence. Functional analyses showed a significant increase in CD25 activation and Artemis protein expression post-editing, although DCLRE1C mRNA levels remained unchanged. The approximately 6–8% increase in CD25 expression was statistically significant but did not reach healthy control levels. These findings suggest that CRISPR-Cas9 –mediated gene editing may enable precise correction and induce measurable cellular-level functional changes, supporting biological feasibility rather than therapeutic efficacy. This study provides a foundation for future research on HSCs and underscores the potential role of CRISPR-Cas9–based approaches in the treatment of inborn errors of immunity (IEIs) associated with DCLRE1C variants.

The online version contains supplementary material available at 10.1007/s12026-026-09758-2.

## Linked entities

- **Genes:** DCLRE1C (DNA cross-link repair 1C) [NCBI Gene 64421]
- **Proteins:** DCLRE1C (DNA cross-link repair 1C), IL2RA (interleukin 2 receptor subunit alpha)
- **Diseases:** combined immunodeficiency (MONDO:0015131)

## Full-text entities

- **Genes:** CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, BTK (Bruton tyrosine kinase) [NCBI Gene 695] {aka AGMX1, AT, ATK, BPK, IGHD3, IMD1}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, beta-actin [NCBI Gene 100303677], CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, ADA (adenosine deaminase) [NCBI Gene 100] {aka ADA1}, CD2 (CD2 molecule) [NCBI Gene 914] {aka LFA-2, SRBC, T11}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, RAG2 (recombination activating 2) [NCBI Gene 5897] {aka RAG-2}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, DCLRE1C (DNA cross-link repair 1C) [NCBI Gene 64421] {aka A-SCID, DCLREC1C, RS-SCID, SCIDA, SNM1C}
- **Diseases:** WHIM syndrome (MESH:C536697), DCLRE1C deficiency (MESH:D007153), inborn error of immunity (MESH:D007154), cytotoxicity (MESH:D064420), SCID (MESH:D016511), respiratory infections (MESH:D012141), WAS (MESH:D014923), hereditary angioedema (MESH:D054179), T and B cell lymphopenia (MESH:D008231), malignancy (MESH:D009369), GvHD (MESH:D006086), autoimmunity (MESH:D001327), hypogammaglobulinemia (MESH:D000361), hereditary diseases (MESH:D030342), aHSCT (MESH:D019337), ADA deficiency (MESH:C531816), CID (MESH:D053632), GATA2 deficiency (MESH:D000077428)
- **Chemicals:** CYTOX (-), penicillin (MESH:D010406), K3 (MESH:C058433), amino acids (MESH:D000596), ampicillin (MESH:D000667), CO2 (MESH:D002245), lipid (MESH:D008055), Calcein (MESH:C007740), hydrogen (MESH:D006859), DMSO (MESH:D004121), EDTA (MESH:D004492), streptomycin (MESH:D013307), TRIzol (MESH:C411644), Biotin (MESH:D001710)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** Thr65
- **Cell lines:** DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004)

## Full text

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## Figures

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## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12950078/full.md

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Source: https://tomesphere.com/paper/PMC12950078