# A Multi-Omics and machine learning platelet-related prognostic signature in multiple myeloma

**Authors:** Xiaojing Li, Qirong Xiao, Kuangfei Wang, Xiaobin Lin, Yu-an He, Jun Peng, Nainong Li, Hai Zhou, Ping Chen

PMC · DOI: 10.1007/s00277-026-06867-8 · Annals of Hematology · 2026-02-28

## TL;DR

This study explores how platelet-related genes affect multiple myeloma progression and creates a genetic risk model to predict patient outcomes.

## Contribution

A novel platelet-related prognostic signature was developed using multi-omics data and machine learning for multiple myeloma risk stratification.

## Key findings

- Platelet activity promotes tumor cell proliferation and suppresses apoptosis in multiple myeloma.
- A 13-gene platelet-related prognostic signature effectively stratifies MM patients into distinct risk groups.
- The integrated model combining genetic and clinical data shows improved predictive ability for patient outcomes.

## Abstract

While platelets are well-documented contributors to tumorigenesis, their role in multiple myeloma (MM) progression and risk stratification remains underexplored. To assess platelet function in MM and verify the prognostic value of platelet-related genes(PRGs) in patients with multiple myeloma, further providing new ideas for the development of MM. We combined the clinical assessment of platelet activation in MM patients with functional co-culture experiments using MM cell lines (RPMI8226, MM.1 S) to investigate platelet-driven tumor progression. Additionally, an integrated analysis of bulk (GSE124310) and single-cell transcriptomic datasets (GSE6477, TCGA-MM data, GSE4581, GSE24080,and GSE136337) was performed to identify platelet-related prognostic genes (PRGs). Through single-cell RNA sequencing, we identified aberrant erythroid-megakaryocyte components in multiple myeloma and further demonstrated dysfunctional platelet activity that promotes tumor cell proliferation and suppresses apoptosis. Using comprehensive bioinformatic screening across 116 algorithms, we identified a combined forward stepwise Cox and Ridge regression model as optimal and established a 13-gene platelet-related prognostic signature. The genetic risk model effectively stratified MM patients into distinct prognostic groups, with high-risk patients exhibiting poorer outcomes in both training and validation cohorts. Finally, we integrated the genetic risk model and clinically relevant information and visualized it with dynamic Nomogram plots, and the ROC and DCA curves demonstrated that the integrated model had better predictive ability. Our study establishes a significant association between platelet activity and disease progression in MM. The platelet-related prognostic signature we developed is correlated with patient outcomes and may have utility in risk stratification.

The online version contains supplementary material available at 10.1007/s00277-026-06867-8.

## Linked entities

- **Diseases:** multiple myeloma (MONDO:0009693)

## Full-text entities

- **Genes:** PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, KIF21B (kinesin family member 21B) [NCBI Gene 23046], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, PCYOX1L (prenylcysteine oxidase 1 like) [NCBI Gene 78991], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, RAPGEF4 (Rap guanine nucleotide exchange factor 4) [NCBI Gene 11069] {aka CAMP-GEFII, CGEF2, EPAC, EPAC 2, EPAC2, Nbla00496}, SELP (selectin P) [NCBI Gene 6403] {aka CD62, CD62P, GMP140, GRMP, LECAM3, PADGEM}, PHF21A (PHD finger protein 21A) [NCBI Gene 51317] {aka BHC80, BM-006, IDDBCS, NEDMS}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, KIF22 (kinesin family member 22) [NCBI Gene 3835] {aka A-328A3.2, KID, KNSL4, OBP, OBP-1, OBP-2}, F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}, HBD (hypophosphatemic bone disease) [NCBI Gene 100187828], PFN1 (profilin 1) [NCBI Gene 5216] {aka ALS18, PDB7}, FLNA (filamin A) [NCBI Gene 2316] {aka ABP-280, ABPX, CSBS, CVD1, FGS2, FLN}, DGKE (diacylglycerol kinase epsilon) [NCBI Gene 8526] {aka AHUS7, DAGK5, DAGK6, DGK, NPHS7}, ORM1 (orosomucoid 1) [NCBI Gene 5004] {aka A1AG1, AGP-A, AGP1, HEL-S-153w, ORM}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, KIF3B (kinesin family member 3B) [NCBI Gene 9371] {aka FLA8, HH0048, KLP-11, OTSC12, RP89}, ITGA2B (integrin subunit alpha 2b) [NCBI Gene 3674] {aka BDPLT16, BDPLT2, CD41, CD41B, FMAIT2, GP2B}, MAFF (MAF bZIP transcription factor F) [NCBI Gene 23764] {aka U-MAF, hMafF}
- **Diseases:** tumorigenic (MESH:D002471), pancreatic cancer (MESH:D010190), plasma cell malignancy (MESH:D054219), inflammation (MESH:D007249), thrombosis (MESH:D013927), metastasis (MESH:D009362), platelet abnormalities (MESH:D001791), blood coagulation (MESH:D001778), MM (MESH:D009101), cancer (MESH:D009369), peripheral thrombocytopenia (MESH:D010523), tumorigenesis (MESH:D063646), hypercoagulable (MESH:D019851), breast cancer (MESH:D001943), aggregation (MESH:D020914), plasma cell disorders (MESH:D007952), hepatocellular carcinoma (MESH:D006528), hematologic malignancies (MESH:D019337)
- **Chemicals:** CY7 (-), ADP (MESH:D000244), phosphatidylserine (MESH:D010718), lactate (MESH:D019344), EDTA (MESH:D004492), CCK-8 (MESH:D012844), CO2 (MESH:D002245)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** RPMI8226 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0014), H929 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_1600), U266 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0566), OPM-2 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_1625), MM.1 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_M492), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), KMS-11 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_2989)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12950032/full.md

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Source: https://tomesphere.com/paper/PMC12950032