# A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range

**Authors:** Claudia Lüke, Suzanne C M Haaijer, Dmitrii Bespiatykh, Daan R Speth, Rob Mesman, Mike S M Jetten, Huub J M Op den Camp, Sebastian Lücker, Laura E Lehtovirta-Morley

PMC · DOI: 10.1093/femsec/fiag013 · FEMS Microbiology Ecology · 2026-02-26

## TL;DR

Scientists isolated a new ammonia-oxidizing archaeon from the North Sea that can survive in a wide range of salt concentrations due to many transport systems.

## Contribution

The first isolation and characterization of a Nitrosarchaeum strain from a fully marine environment, revealing its adaptation to broad salinity.

## Key findings

- Nitrosarchaeum marinum T12 can grow in salinity ranging from 1 to 60 g l−1.
- The strain possesses 20 different transport systems potentially involved in osmoadaptation.
- Comparative genomics showed a highly diverse genetic repertoire with many unique genes in Nitrosarchaeum.

## Abstract

Ammonia-oxidizing archaea (AOA) are among the most abundant micro-organisms in the biosphere. They are crucial for the global nitrogen cycle through catalyzing the oxidation of ammonia to nitrite. The biochemistry, physiology, and mechanisms underlying the adaptation of AOA to diverse habitats are not fully understood, partly due to the lack of AOA pure laboratory cultures. In this study, we present the isolation of a novel species, Nitrosarchaeum marinum T12, the first Nitrosarchaeum strain isolated from a fully marine environment. We demonstrate that this AOA can grow over a vast salinity range (1–60 g l−1). Comparative genomics of Nitrosarchaeum and Nitrosopumilus strains revealed a highly diverse genetic repertoire, with many genes unique to single species. N. marinum T12 possesses genes for chemotaxis and motility and encodes 20 different transport systems potentially involved in osmoadaptation. This diversity of transporters might provide a key for flexibility and adaptation to growth over such a wide salinity range. Strain T12 may present an example of successful adaptation to increasing salt concentration, suggesting that these AOA might be, to a certain extent, resilient to future environmental changes.

Isolation and characterization of a novel North Sea ammonia oxidizing archaeon, Nitrosarchaeum marinum T12, reveals an adaptation to a broad salinity underpinned by high abundance of transporters.

## Linked entities

- **Species:** Nitrosarchaeum (taxon 1007082), Nitrosopumilus (taxon 338191)

## Full-text entities

- **Diseases:** AOA (MESH:D020165), CL (MESH:D002971)
- **Chemicals:** CaCl2 (MESH:D002122), 2-(N-morpholino)ethanesulfonic acid (MESH:C004550), SDS (MESH:D012967), isopropanol (MESH:D019840), spermidine (MESH:D013095), copper (MESH:D003300), NO (MESH:D009569), kanamycin (MESH:D007612), magnesium (MESH:D008274), reactive oxygen species (MESH:D017382), calcium (MESH:D002118), water (MESH:D014867), phenol (MESH:D019800), polystyrene (MESH:D011137), iron (MESH:D007501), chloroform (MESH:D002725), agarose (MESH:D012685), ectoine (MESH:C045628), nitrous oxide (MESH:D009609), hydroxylamine (MESH:D019811), ammonium (MESH:D064751), nitrogen (MESH:D009584), Nitrite (MESH:D009573), MgSO4 (MESH:D008278), NH4Cl (MESH:D000643), CTAB (MESH:D000077286), urea (MESH:D014508), methane (MESH:D008697), ciprofloxacin (MESH:D002939), methylphosphonic acid (MESH:C032627), streptomycin (MESH:D013307), carbon (MESH:D002244), NaHCO3 (MESH:D017693), pyruvate (MESH:D019289), MgCl2 (MESH:D015636), CheC (-), spectinomycin (MESH:D000198), phenol red (MESH:D010637), NaCl (MESH:D012965), salt (MESH:D012492), potassium (MESH:D011188), HEPES (MESH:D006531), glycine betaine (MESH:D001622), Ammonia (MESH:D000641), sodium (MESH:D012964)
- **Species:** Nitrosarchaeum koreense MY1 (strain) [taxon 1001994], Ammonia (genus) [taxon 29189], Nitrosarchaeum (genus) [taxon 1007082], Candidatus Nitrosarchaeum limnium (species) [taxon 1007084], Nitrososphaerota (phylum) [taxon 651137], Nitrosopumilus (genus) [taxon 338191], Nitrosomonas (genus) [taxon 914], Candidatus Nitrospira salsa (species) [taxon 1308821], Nitrosarchaeum koreense (species) [taxon 1088740], Nitrosomonadales (order) [taxon 32003], Nitrososphaeria (class) [taxon 1643678], Nitrosopumilus maritimus (species) [taxon 338192], Candidatus Nitrosocaldus (genus) [taxon 498374], Thermoproteota (phylum) [taxon 28889], Novosphingobium marinum (species) [taxon 1514948], Nitrososphaerales (order) [taxon 1033996], Candidatus Nitrosopelagicus (genus) [taxon 1593364], Nitrosotalea (genus) [taxon 1078904], Melanustilospora ari (species) [taxon 458650], Candidatus Nitrosotenuis (genus) [taxon 1825023], Nitrospina (genus) [taxon 35800]
- **Mutations:** T12, C-22 C, T12T

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12949516/full.md

## References

77 references — full list in the complete paper: https://tomesphere.com/paper/PMC12949516/full.md

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Source: https://tomesphere.com/paper/PMC12949516