# Benign, persistent, and invasive: mechanistic and translational approaches to middle‑ear cholesteatoma

**Authors:** Pinelopi Samara, Michail Athanasopoulos, Ioannis Athanasopoulos

PMC · DOI: 10.37349/etat.2026.1002359 · Exploration of Targeted Anti-tumor Therapy · 2026-02-24

## TL;DR

Middle-ear cholesteatoma is a benign but destructive lesion that behaves like a non-cancerous tumor, driven by chronic inflammation and environmental factors rather than genetic changes.

## Contribution

The paper integrates mechanistic insights with clinical strategies to develop microenvironment-targeted therapies for cholesteatoma.

## Key findings

- Cholesteatoma's aggression is driven by chronic inflammation, proteolytic remodeling, and a dysbiotic microbiome.
- RNA modifications, oxidative stress, and immune cell infiltration contribute to lesion persistence and bone erosion.
- Microenvironment-directed therapies could complement surgery and reduce recurrence.

## Abstract

Acquired middle-ear cholesteatoma is a histologically benign keratinizing squamous epithelial lesion that paradoxically exhibits locally destructive, recurrent, and invasive behavior, often resulting in ossicular erosion, hearing loss, labyrinthine fistula, and, rarely, intracranial complications. Surgical excision remains the primary management strategy; however, recurrence is common due to persistent microenvironmental drivers. Recent mechanistic studies—including single-cell transcriptomics, spatial proteomics, and epigenetic profiling—reveal a multifactorial pathogenesis orchestrated by chronic inflammation, proteolytic extracellular-matrix remodeling, osteoclast activation via RANKL and activin A, epithelial plasticity with partial epithelial-to-mesenchymal transition (EMT), and a dysbiotic, biofilm-forming microbiome. Emerging evidence further implicates oxidative stress, RNA and epigenetic modifications, miRNA dysregulation, and immune cell infiltration as central modulators of lesion chronicity and bone resorption. Collectively, these processes establish a self-sustaining pro-osteolytic microenvironment that drives bone erosion and postoperative recurrence. Cholesteatoma recapitulates several features of malignant lesions—hyperproliferation, local invasion, and stromal/immune cell recruitment—yet remains fundamentally benign, lacking metastatic potential and genomic instability. Its aggression is ecological rather than genetic, highlighting the potential for microenvironment-directed, precision-based strategies. Adjunctive approaches may include local delivery of modulatory agents, targeted interference with inflammatory, proteolytic, osteoclastogenic, and microbial axes, and biomarker-guided patient stratification. Preclinical and early-phase experimental studies assessing target engagement, radiologic stabilization, and molecular surrogates of efficacy could inform safer, mechanism-driven interventions that complement surgery, reduce recurrence, and preserve hearing. Integrating molecular pathobiology with clinical strategy positions cholesteatoma as a model for benign yet locally aggressive, microenvironment-driven disease, providing a roadmap for translational therapies with direct relevance to surgical practice.

## Linked entities

- **Proteins:** TNFSF11 (TNF superfamily member 11)
- **Diseases:** cholesteatoma (MONDO:0006530)

## Full-text entities

- **Genes:** IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839] {aka HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B}, MPO (myeloperoxidase) [NCBI Gene 4353], TNFSF11 (TNF superfamily member 11) [NCBI Gene 8600] {aka CD254, ODF, OPGL, OPTB2, RANKL, TNLG6B}, INHBE (inhibin subunit beta E) [NCBI Gene 83729], HSPB2 (heat shock protein family B (small) member 2) [NCBI Gene 3316] {aka HSP27, Hs.78846, LOH11CR1K, MKBP}, MIR215 (microRNA 215) [NCBI Gene 406997] {aka MIRN215, miRNA215, mir-215}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, MMP8 (matrix metallopeptidase 8) [NCBI Gene 4317] {aka CLG1, HNC, MMP-8, PMNL-CL}, MMP14 (matrix metallopeptidase 14) [NCBI Gene 4323] {aka MMP-14, MMP-X1, MT-MMP, MT-MMP 1, MT1-MMP, MT1MMP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PTHLH (parathyroid hormone like hormone) [NCBI Gene 5744] {aka BDE2, HHM, PLP, PTHR, PTHRP}, CTSS (cathepsin S) [NCBI Gene 1520], FOXC2 (forkhead box C2) [NCBI Gene 2303] {aka FKHL14, LD, MFH-1, MFH1}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TNFRSF11B (TNF receptor superfamily member 11b) [NCBI Gene 4982] {aka OCIF, OPG, PDB5, TR1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}
- **Diseases:** facial nerve palsy (MESH:D005155), MMP (MESH:C535501), keloids (MESH:D007627), bone destruction (MESH:D001847), osteolysis (MESH:D010014), Bone erosion (MESH:D014077), ototoxicity (MESH:D006311), aggression (MESH:D010554), labyrinthine fistula (MESH:D005402), chronic (MESH:D002908), fibrosis (MESH:D005355), fatty tumor (MESH:D008067), Chronic inflammation (MESH:D007249), ossicular erosion (MESH:C537142), trauma (MESH:D014947), endometriosis (MESH:D004715), Eustachian tube dysfunction (MESH:D005184), malignant disease (MESH:D009369), Cholesteatoma (MESH:D002781), aggressive fibromatosis (MESH:D018222), conductive hearing loss (MESH:D006314), tympanic membrane perforation (MESH:D018058), Congenital lesions (MESH:D009059), pigmented villonodular synovitis (MESH:D013586), bone resorption (MESH:D001862), hearing loss (MESH:D034381), -ear cholesteatoma (MESH:D018424), chronic otitis media (MESH:D010033)
- **Chemicals:** m6A (-), lipid (MESH:D008055), ROS (MESH:D017382), N6-methyladenosine (MESH:C010223), 5-fluorouracil (MESH:D005472), cholesterol (MESH:D002784)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12949409/full.md

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Source: https://tomesphere.com/paper/PMC12949409