# Imidazole Propionate Induces Kidney Damage by Activating the ROS‐NLRP3 Signaling Pathway Through mTOR Inhibition of Autophagy in Renal Tubular Epithelial Cells

**Authors:** Chen Zeng, Yu-Ru Xiao, Si-Qing Li, Man Guo, Qi Wu, Yi-Meng He, Yu-Fan Zhang, Xiao-Zhen Tan, Yong Xu, Fang-Yuan Teng

PMC · DOI: 10.1155/mi/2457371 · Mediators of Inflammation · 2026-02-27

## TL;DR

This study shows that imidazole propionate, a gut microbiota metabolite, harms kidney function by disrupting autophagy and promoting inflammation, and that rapamycin can reverse this damage.

## Contribution

The study is the first to elucidate the molecular mechanisms by which imidazole propionate induces kidney damage and identifies rapamycin as a potential therapeutic.

## Key findings

- ImP suppresses autophagy and activates the ROS-NLRP3 pathway in renal tubular cells.
- Rapamycin restores autophagy and reduces inflammation and kidney injury caused by ImP.
- Transcriptomic analysis confirms ImP-induced changes in autophagy- and inflammation-related genes.

## Abstract

L‐Histidine, a parent structure of environmental contaminants (e.g., pesticides and preservatives), may undergo bioaccumulation through the food chain and be metabolized by the gut microbiota into deleterious compounds, ultimately compromising human health. Recent studies have identified abnormally elevated levels of the histidine‐derived metabolite imidazole propionate (ImP) in the serum of type 2 diabetes mellitus patients. However, the pathophysiological implications of excessive ImP on renal function and its underlying molecular mechanisms remain poorly characterized. This study is the first to elucidate the detrimental effects of ImP on renal function in mice and its molecular mechanisms. Our findings demonstrate that ImP exacerbates renal dysfunction and induces structural and functional abnormalities in renal tubules. Mechanistically, ImP significantly suppresses autophagy in renal tubular epithelial cells and activates the reactive oxygen species (ROS)‐NOD‐like receptor pyrin domain‐containing 3 (NLRP3) signaling pathway, thereby promoting the expression of the pro‐inflammatory cytokine interleukin‐1β (IL‐1β). Notably, the mechanistic target of rapamycin (mTOR) inhibitor rapamycin (Rap) restores autophagy, inhibits the ROS/NLRP3/IL‐1β axis, and mitigates ImP‐induced renal injury. Transcriptomic sequencing of mouse kidneys reveals that ImP upregulates the expression of autophagy‐ and inflammation‐related genes, while its inhibitor suppresses these genetic alterations. This study highlights the potential nephrotoxic effects of ImP and underscores the therapeutic value of Rap, providing a theoretical foundation for understanding the role of gut microbiota metabolites in the pathogenesis, prevention, and treatment of kidney diseases.

## Linked entities

- **Genes:** NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548], IL1B (interleukin 1 beta) [NCBI Gene 3553], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475]
- **Chemicals:** imidazole propionate (PubChem CID 70630), L-Histidine (PubChem CID 6274), rapamycin (PubChem CID 5284616)
- **Diseases:** type 2 diabetes mellitus (MONDO:0005148)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** IARS1 (isoleucyl-tRNA synthetase 1) [NCBI Gene 3376] {aka GRIDHH, IARS, ILERS, ILRS, IRS, PRO0785}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Nup62 (nucleoporin 62) [NCBI Gene 18226] {aka D7Ertd649e, Nupc1, p62}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Rptor (regulatory associated protein of MTOR, complex 1) [NCBI Gene 74370] {aka 4932417H02Rik, Rap, Raptor, mKIAA1303}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Cdk2 (cyclin dependent kinase 2) [NCBI Gene 12566] {aka A630093N05Rik}, Ccnd1 (cyclin D1) [NCBI Gene 12443] {aka CycD1, Cyl-1, PRAD1, bcl-1, cD1}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, RPS6KB1 (ribosomal protein S6 kinase B1) [NCBI Gene 6198] {aka PS6K, S6K, S6K-beta-1, S6K1, STK14A, p70 S6KA}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, BRAP (BRCA1 associated protein) [NCBI Gene 8315] {aka BRAP2, IMP, RNF52}, Brap (BRCA1 associated protein) [NCBI Gene 72399] {aka 3010002G07Rik, BRAP2, IMP}, LRPAP1 (LDL receptor related protein associated protein 1) [NCBI Gene 4043] {aka A2MRAP, A2RAP, HBP44, MYP23, RAP, alpha-2-MRAP}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Il18 (interleukin 18) [NCBI Gene 16173] {aka Igif, Il-18}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, Casp1 (caspase 1) [NCBI Gene 12362] {aka ICE, Il1bc}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Pycard (PYD and CARD domain containing) [NCBI Gene 66824] {aka 9130417A21Rik, Asc, CARD5, TMS-1, TNS1, masc}
- **Diseases:** hyperplasia of renal tubules (MESH:D007673), hypothalamic dysfunction (MESH:D007027), renal tubular dysfunction (MESH:D005198), atherosclerosis (MESH:D050197), neurodegenerative disorders (MESH:D019636), chronic inflammation (MESH:D007249), prostate cancer (MESH:D011471), hyperglycemia (MESH:D006943), metabolic syndromes (MESH:D024821), renal tubular inflammatory (MESH:D000141), cytotoxic (MESH:D064420), CKD (MESH:D051436), insulin resistance (MESH:D007333), glucose metabolism disorders (MESH:D044882), uremic toxins (MESH:D006463), cardiovascular diseases (MESH:D002318), immune (MESH:D007154), hypertrophy (MESH:D006984), diabetes (MESH:D003920), tumor (MESH:D009369), acute kidney injury (MESH:D058186), Noncommunicable Chronic Diseases (MESH:D000073296), T2D (MESH:D003924), Kidney Damage (MESH:D007674), glioblastoma (MESH:D005909), hypertensive nephropathy (MESH:C563161), diabetic nephropathy (MESH:D003928), ischemia (MESH:D007511), renal (MESH:D006030), metabolic disorders (MESH:D008659), hyperplasia (MESH:D006965)
- **Chemicals:** Imazalil (MESH:C017435), proton (MESH:D011522), indoxyl sulfate (MESH:D007200), Hematoxylin (MESH:D006416), 2,7-DCFH-DA (-), metal (MESH:D008670), paraffin (MESH:D010232), bile acids (MESH:D001647), H&amp;E (MESH:D006371), ketoconazole (MESH:D007654), Rap (MESH:D020123), 2,7-Dichlorodihydrofluorescein Diacetate (MESH:C110400), bicarbonate (MESH:D001639), fatty acid (MESH:D005227), ImP (MESH:C018976), Histidine (MESH:D006639), reactive nitrogen species (MESH:D026361), p-cresyl sulfate (MESH:C408690), F-12 (MESH:C007782), DCFH-DA (MESH:C029569), lipid (MESH:D008055), clotrimazole (MESH:D003022), Imidazole (MESH:C029899), CO2 (MESH:D002245), metformin (MESH:D008687), formalin (MESH:D005557), creatinine (MESH:D003404), glucose (MESH:D005947), SCFAs (MESH:D005232), ROS (MESH:D017382), benzimidazole (MESH:C031000), eosin (MESH:D004801), Laemmli buffer (MESH:C088816), PBS (MESH:D007854), tryptophan (MESH:D014364), RNS (MESH:D011886), SDS (MESH:D012967), PVDF (MESH:C024865)
- **Species:** Bifidobacterium (genus) [taxon 1678], Lactobacillus (genus) [taxon 1578], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Adenoviridae (family) [taxon 10508], Mycoplasma (genus) [taxon 2093]
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), CVCL_0302 — Homo sapiens (Human), Finite cell line (CVCL_7277)

## Full text

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## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12949363/full.md

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Source: https://tomesphere.com/paper/PMC12949363