# DNMT2 inhibits anaplastic thyroid cancer progression by downregulating 5’tiRNAGly-GCC production

**Authors:** Ruixin Zhou, Baizhao Li, Mingyu Cao, Zhijing Wu, Fada Xia, Xinying Li

PMC · DOI: 10.1038/s41419-026-08488-5 · Cell Death & Disease · 2026-02-21

## TL;DR

DNMT2 prevents aggressive thyroid cancer by reducing a specific tRNA fragment that promotes cancer growth.

## Contribution

This study reveals how DNMT2 inhibits anaplastic thyroid cancer by regulating tRNA methylation and 5’tiRNAGly-GCC production.

## Key findings

- Reduced DNMT2 expression increases 5’tiRNAGly-GCC levels, promoting anaplastic thyroid cancer progression.
- 5’tiRNAGly-GCC binds to hnRNPH1 and reduces its protein levels, contributing to cancer development.
- Combining a 5’tiRNAGly-GCC inhibitor with doxorubicin suppresses cancer progression in animal models.

## Abstract

Complex tRNA methylation modifications collectively maintain the structural integrity and functional efficiency of tRNA. DNA methyltransferase 2 (DNMT2) regulates the m5C methylation status of tRNA, thereby reprogramming its structure and influencing cancer progression. However, the precise mechanisms through which DNMT2 affects tumor development via tRNA methylation remain insufficiently understood. In this study, we demonstrate that reduced DNMT2 expression promotes the progression of anaplastic thyroid carcinoma (ATC). Specifically, in ATC, DNMT2 catalyzes m5C38 methylation on three tRNAs: tRNA-Asp-GUC, tRNA-Gly-GCC, and tRNA-Val-AAC. Loss of DNMT2 leads to an increased abundance of 5’tiRNAGly-GCC, generated by ANG-mediated cleavage of m5C38-hypomethylated tRNA-Gly-GCC. This 5’tiRNAGly-GCC directly binds to hnRNPH1, resulting in a reduction of its protein levels. Moreover, combined treatment with a 5’tiRNAGly-GCC inhibitor and doxorubicin hydrochloride significantly suppresses ATC progression in vivo. Thus, decreased DNMT2 expression facilitates ATC development by promoting the production of 5’tiRNAGly-GCC. Our findings also highlight the considerable therapeutic potential of targeting 5’tiRNAGly-GCC in the treatment of ATC.

## Linked entities

- **Genes:** TRDMT1 (tRNA aspartic acid methyltransferase 1) [NCBI Gene 1787], HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) [NCBI Gene 3187]
- **Proteins:** HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1)
- **Chemicals:** doxorubicin hydrochloride (PubChem CID 443939)
- **Diseases:** anaplastic thyroid carcinoma (MONDO:0006468), anaplastic thyroid cancer (MONDO:0006468)

## Full-text entities

- **Genes:** RRM2 (ribonucleotide reductase regulatory subunit M2) [NCBI Gene 6241] {aka C2orf48, R2, RR2, RR2M}, Hnrnph1 (heterogeneous nuclear ribonucleoprotein H1) [NCBI Gene 59013] {aka E430005G16Rik, Hnrnph, Hnrph1}, CKLF (chemokine like factor) [NCBI Gene 51192] {aka C32, CKLF1, CKLF2, CKLF3, CKLF4, HSPC224}, Ang (angiogenin, ribonuclease, RNase A family, 5) [NCBI Gene 11727] {aka Ang1, Rnase5, Rnase5a}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, GUCY2C (guanylate cyclase 2C) [NCBI Gene 2984] {aka DIAR6, GC-C, GCC, GUC2C, HSER, MECIL}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Vim (vimentin) [NCBI Gene 22352], ALKBH1 (alkB homolog 1, histone H2A dioxygenase) [NCBI Gene 8846] {aka ABH, ABH1, ALKBH, alkB, hABH}, Lmnb1 (lamin B1) [NCBI Gene 16906], NSUN2 (NOP2/Sun RNA methyltransferase 2) [NCBI Gene 54888] {aka MISU, MRT5, SAKI, TRM4}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, SUGP1 (SURP and G-patch domain containing 1) [NCBI Gene 57794] {aka F23858, RBP, SF4}, TRDMT1 (tRNA aspartic acid methyltransferase 1) [NCBI Gene 1787] {aka DMNT2, DNMT2, MHSAIIP, PUMET, RNMT1}, Trdmt1 (tRNA aspartic acid methyltransferase 1) [NCBI Gene 13434] {aka Dnmt2, Rnmt2, m.MmuIIP, met-2}, Cdh1 (cadherin 1) [NCBI Gene 12550] {aka ARC-1, E-cad, Ecad, L-CAM, UVO, Um}, RRM1 (ribonucleotide reductase catalytic subunit M1) [NCBI Gene 6240] {aka PEOB6, R1, RIR1, RR1}, ANG (angiogenin) [NCBI Gene 283] {aka ALS9, HEL168, RAA1, RNASE4, RNASE5}, Cdh2 (cadherin 2) [NCBI Gene 12558] {aka CDHN, N-CAD, Ncad}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, RBMS3 (RNA binding motif single stranded interacting protein 3) [NCBI Gene 27303], HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) [NCBI Gene 3187] {aka HNRPH, HNRPH1, NEDCDS, hnRNPH}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}
- **Diseases:** glioblastoma (MESH:D005909), hepatocellular carcinoma (MESH:D006528), endocrine tumor (MESH:D004701), cytotoxicity (MESH:D064420), neck masses (MESH:D006258), Cancer (MESH:D009369), ATC (MESH:D065646), TC (MESH:D013964), lung metastasis (MESH:D009362), osteosarcoma (MESH:D012516)
- **Chemicals:** Cy5 (MESH:C085321), BS (MESH:D001895), -Gly (MESH:D005998), formaldehyde (MESH:D005557), SDS (MESH:D012967), PVDF (MESH:C024865), MES (MESH:C004550), PBS (MESH:D007854), agarose (MESH:D012685), trametinib (MESH:C560077), nucleoside (MESH:D009705), Trizol (MESH:C411644), paraformaldehyde (MESH:C003043), dabrafenib (MESH:C561627), CO2 (MESH:D002245), water (MESH:D014867), 5-methylcytosine (MESH:D044503), acetone (MESH:D000096), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), PC (MESH:C053518), IP (MESH:C041508), Triton X-100 (MESH:D017830), Urea (MESH:D014508), puromycin (MESH:D011691), penicillin (MESH:D010406), Doxorubicin (MESH:D004317), H&amp;E (MESH:D006371), NaCl (MESH:D012965), crystal violet (MESH:D005840), paraffin (MESH:D010232), MgCl2 (MESH:D015636), CHIRP (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** H138, V600E, glycine for 5, C79A, H138A, 37  C, C38A, (P) with 2, H37A, H37, (N) with 2, C32A, TCA at 4 
- **Cell lines:** CVCL_2975 — Homo sapiens (Human), Dedifferentiated chondrosarcoma, Cancer cell line (CVCL_D706), KHM-5M — Homo sapiens (Human), Thyroid gland anaplastic carcinoma, Cancer cell line (CVCL_2975), SH — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_W974), Nthy-ori-3-1 — Homo sapiens (Human), Transformed cell line (CVCL_2659), CVCL_2659 — Homo sapiens (Human), Methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency, Finite cell line (CVCL_B4AT), FRO — Homo sapiens (Human), Thyroid gland anaplastic carcinoma, Cancer cell line (CVCL_6287), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), BHT101 — Homo sapiens (Human), Thyroid gland anaplastic carcinoma, Cancer cell line (CVCL_1085), 8305C — Homo sapiens (Human), Thyroid gland anaplastic carcinoma, Cancer cell line (CVCL_1053), CAL62 — Homo sapiens (Human), Thyroid gland anaplastic carcinoma, Cancer cell line (CVCL_1112)

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## Figures

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## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12949022/full.md

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Source: https://tomesphere.com/paper/PMC12949022