# A small molecule inhibitor of ARF GTPase protein 1 limits liver and colon cancer cell growth and metastasis

**Authors:** Hui Peng, Jyoti Chhimwal, Wei Fan, Jiaohong Wang, Lucía Barbier-Torres, Sonal Sinha, Avradip Chatterjee, Yi Zhang, Maria Lauda Tomasi, José M. Mato, Ramachandran Murali, Shelly C. Lu

PMC · DOI: 10.1038/s41419-026-08477-8 · Cell Death & Disease · 2026-02-20

## TL;DR

A new small molecule disrupts a key protein interaction in liver and colon cancer cells, reducing their growth and spread in mice.

## Contribution

A novel small molecule inhibitor targeting GIT1-MAT2B interaction is developed for liver and colon cancer treatment.

## Key findings

- Compound 3 selectively interacts with GIT1 and shows anti-cancer effects in liver and colon cancer cells.
- C3 inhibits tumor growth and metastasis in mice models of liver and colon cancer.
- C3 disrupts GIT1-MAT2B interaction and affects downstream signaling pathways like RAS-RAF-MEK-ERK.

## Abstract

ARF GTPase protein 1 (GIT1) is a scaffold protein that is overexpressed in hepatocellular carcinoma (HCC) and colorectal cancer (CRC). GIT1 forms a complex with methionine adenosyltransferase 2B (MAT2B) that activates RAS-RAF-MEK-ERK signaling in HCC and CRC to enhance tumorigenicity. Here, we investigated in a proof-of-concept study whether a small molecule that disrupts GIT1-MAT2B interaction can be effective in HCC and CRC treatment. Since the GIT1 crystal structure is unavailable, we developed a molecular model and used computer-based drug discovery approach to screen for small molecules targeting the GIT1 ankyrin repeat domain, the region closest to where MAT2B interacts that is accessible. Of nine compounds tested, compound 3 (C3) selectively interacts with GIT1 and shows an anti-cancer effect in a GIT1-dependent manner. C3 is antiproliferative, induced apoptosis and G2/M cell cycle arrest while inhibiting colony formation and migration in liver and colon cancer cells. C3 lowered interaction between GIT1 and MAT2B, and with downstream effectors cRAF, MEK and ERK, lowering MEK activity and cyclin D1 expression. Unexpectedly, C3 stabilized GIT1 interaction with cyclin B1 while weakening cyclin B1’s interaction with components of the anaphase promoting complex, concomitant with sustained cyclin B1 expression and mitosis arrest. In mice, C3 administration was well tolerated and inhibited murine CRC growth and liver metastasis in immune competent mice and human CRC growth in the livers of nude mice. In conclusion, a small molecule inhibitor that disrupts GIT1’s normal interactome is a promising new approach to treating liver and colon cancers.

## Linked entities

- **Genes:** GIT1 (GIT ArfGAP 1) [NCBI Gene 28964], MAT2B (methionine adenosyltransferase 2 non-catalytic beta subunit) [NCBI Gene 27430], RAF1 (Raf-1 proto-oncogene, serine/threonine kinase) [NCBI Gene 5894], MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609], EPHB2 (EPH receptor B2) [NCBI Gene 2048], ccnd1.S (cyclin D1 S homeolog) [NCBI Gene 379161], CycB (Cyclin B) [NCBI Gene 37618]
- **Proteins:** RAF1 (Raf-1 proto-oncogene, serine/threonine kinase), MAP2K7 (mitogen-activated protein kinase kinase 7), EPHB2 (EPH receptor B2), ccnd1.S (cyclin D1 S homeolog), CycB (Cyclin B)
- **Chemicals:** compound 3 (PubChem CID 20788885), C3 (PubChem CID 30627)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), colorectal cancer (MONDO:0005575)
- **Species:** Mus musculus (taxon 10090), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, APCS (amyloid P component, serum) [NCBI Gene 325] {aka HEL-S-92n, PTX2, SAP}, GIT1 (GIT ArfGAP 1) [NCBI Gene 28964] {aka p95-APP1}, PXN (paxillin) [NCBI Gene 5829], SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, Zhx2 (zinc fingers and homeoboxes 2) [NCBI Gene 387609] {aka Afr-1, Afr1, Raf, mKIAA0854}, Raf1 (Raf1 proto-oncogene, serine/threonine kinase) [NCBI Gene 110157] {aka 6430402F14Rik, Craf1, D830050J10Rik, Raf-1, c-Raf, cRaf}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, MAT2A (methionine adenosyltransferase 2A) [NCBI Gene 4144] {aka MATA2, MATII, SAMS2}, WEE1 (WEE1 G2 checkpoint kinase) [NCBI Gene 7465] {aka WEE1A, WEE1hu}, ANK1 (ankyrin 1) [NCBI Gene 286] {aka ANK, SPH1, SPH2, ankyrin-1}, CDC27 (cell division cycle 27) [NCBI Gene 996] {aka ANAPC3, APC3, CDC27Hs, D0S1430E, D17S978E, H-NUC}, RAF1 (Raf-1 proto-oncogene, serine/threonine kinase) [NCBI Gene 5894] {aka CMD1NN, CRAF, NS5, Raf-1, c-Raf}, CDC20 (cell division cycle 20) [NCBI Gene 991] {aka CDC20A, OOMD14, OZEMA14, bA276H19.3, p55CDC}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, PCNA (proliferating cell nuclear antigen) [NCBI Gene 5111] {aka ATLD2}, Pcna (proliferating cell nuclear antigen) [NCBI Gene 18538], CDC25C (cell division cycle 25C) [NCBI Gene 995] {aka CDC25, PPP1R60}, LAMTOR3 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 3) [NCBI Gene 8649] {aka MAP2K1IP1, MAPBP, MAPKSP1, MP1, PRO0633, Ragulator3}, Slc17a5 (solute carrier family 17 (anion/sugar transporter), member 5) [NCBI Gene 235504] {aka 4631416G20Rik, 4732491M05, AST, ISSD, NSD, SD}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, Mdk (midkine) [NCBI Gene 17242] {aka MK, Mek}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, MAP2K1 (mitogen-activated protein kinase kinase 1) [NCBI Gene 5604] {aka CFC3, MAPKK1, MEK1, MEL, MKK1, PRKMK1}, Git1 (GIT ArfGAP 1) [NCBI Gene 216963] {aka Cat-1, p95Cat}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, Ccnb1 (cyclin B1) [NCBI Gene 268697] {aka Ccnb1-rs1, Ccnb1-rs13, CycB1, Cycb-4, Cycb-5, Cycb1-rs1}, AGAP4 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 4) [NCBI Gene 119016] {aka AGAP-4, AGAP-8, AGAP8, CTGLF1, CTGLF5, MRIP2}, GIT2 (GIT ArfGAP 2) [NCBI Gene 9815] {aka CAT-2, CAT2, PKL}, Ccnd1 (cyclin D1) [NCBI Gene 12443] {aka CycD1, Cyl-1, PRAD1, bcl-1, cD1}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, IQGAP1 (IQ motif containing GTPase activating protein 1) [NCBI Gene 8826] {aka HUMORFA01, SAR1, p195}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, SFTPA2 (surfactant protein A2) [NCBI Gene 729238] {aka COLEC5, ILD2, PSAP, PSP-A, PSPA, SFTP1}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, Mat2b (methionine adenosyltransferase 2 non-catalytic beta subunit methionine) [NCBI Gene 108645] {aka 1110064C04Rik, 2410018D16Rik, MAT-II, MATIIbeta, TGR}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MAT2B (methionine adenosyltransferase 2 non-catalytic beta subunit) [NCBI Gene 27430] {aka MAT-II, MATIIbeta, Nbla02999, SDR23E1, TGR}, AURKA (aurora kinase A) [NCBI Gene 6790] {aka AIK, ARK1, AURA, BTAK, PPP1R47, STK15}, CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}
- **Diseases:** CRLM (MESH:D009362), tumorigenicity (MESH:D002471), CRC liver metastasis (MESH:D015179), toxicity (MESH:D064420), liver (MESH:D017093), HCC (MESH:D006528), necrosis (MESH:D009336), liver tumor (MESH:D008113), biliary adenocarcinoma (MESH:D000230), Cancer (MESH:D009369), hepatoblastoma (MESH:D018197), gallbladder cancer (MESH:D005706), tumorigenesis (MESH:D063646)
- **Chemicals:** C3 (-), H&amp;E (MESH:D006371), Glycerol (MESH:D005990), MTT (MESH:C070243), CHX (MESH:D003513), formalin (MESH:D005557), DMSO (MESH:D004121), PI (MESH:D010716), vemurafenib (MESH:D000077484), sorafenib (MESH:D000077157), 5-Ethynyl-2'-deoxyuridine (MESH:C031086)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093]
- **Mutations:** R273H, BRAFV600E
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), MC38 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_B288), C3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), AML12 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0140), MzChA-1 — Homo sapiens (Human), Gallbladder carcinoma, Cancer cell line (CVCL_6932), RKO — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0504), /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), embryonic kidney cell — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_M624), Hep3B — Homo sapiens (Human), Childhood hepatocellular carcinoma, Cancer cell line (CVCL_0326)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12948951