# Proton pump inhibitors modulate esophageal epithelial barrier function and crosstalk with eosinophils

**Authors:** Ravi Gautam, Megha Lal, Margaret C. Carroll, Zoe Mrozek, Tina Trachsel, Jarad Beers, Melanie A. Ruffner

PMC · DOI: 10.1111/pai.70315 · Pediatric Allergy and Immunology · 2026-02-27

## TL;DR

This study shows that proton pump inhibitors like omeprazole can improve esophageal health in EoE by reducing inflammation and restoring epithelial barriers.

## Contribution

The study reveals novel mechanisms by which PPIs modulate type 2 inflammation and epithelial integrity in EoE.

## Key findings

- Omeprazole restores barrier integrity and alters gene expression in IL-13-treated esophageal epithelial cells.
- Omeprazole reduces eosinophil adhesion markers and chemokine secretion in co-culture systems.
- PPIs alleviate IL-13-induced inflammation and epithelial dysfunction in EoE models.

## Abstract

Eosinophilic esophagitis (EoE) is a chronic allergic disorder driven by type 2 inflammation, characterized by eosinophilic infiltration and esophageal epithelial abnormalities, including barrier dysfunction, basal cell hyperplasia, epithelial thickening, and loss of differentiation. Although proton pump inhibitor (PPI) therapy is frequently employed in the management of EoE and is known to reduce esophageal eosinophilia, improve barrier function, and exert anti‐inflammatory effects, the precise mechanism by which PPIs modulate type 2 inflammation and epithelial integrity remains incompletely understood.

Air‐liquid interface culture of esophageal epithelial cells was used to investigate the impact of the PPI omeprazole on barrier integrity in IL‐13‐treated cultures. Epithelial chemokine secretion was assessed following stimulation with IL‐13 and omeprazole, and eosinophil migration from healthy human donors was evaluated using 3 μm pore‐sized transwells. A co‐culture system of epithelial cells and eosinophils was used to examine chemokine secretion, eosinophil adhesion, and activation marker expression.

Omeprazole treatment of IL‐13‐treated air‐liquid interface (ALI) cultures restored barrier integrity compared with IL‐13‐treated ALI cultures and resulted in 186 differentially expressed genes. Omeprazole treatment reduced STAT6 phosphorylation, downregulated calpain 14 expression, and upregulated desmoglein‐1 in IL‐13‐treated ALI samples. IL‐13 treatment induced upregulation of Eotaxin‐3, CXCL10, and periostin, which were downregulated by omeprazole. Eosinophils co‐cultured with human esophageal epithelial cells in the presence of omeprazole had diminished CD11b, CD18, and CD69 expression compared to those cultured with IL‐13 alone, and less eotaxin‐3, CXCL10, CCL2, and CCL4 were recovered from the co‐culture media.

Omeprazole diminished the effects of IL‐13 in both the epithelial air‐liquid interface model and eosinophil‐epithelial co‐cultures, alleviating barrier dysfunction, chemokine expression, and the upregulation of eosinophil adhesion markers.

## Linked entities

- **Genes:** STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778], CAPN14 (calpain 14) [NCBI Gene 768684], CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627], postn (periostin, osteoblast specific factor) [NCBI Gene 100127174], ITGAM (integrin subunit alpha M) [NCBI Gene 3684], ITGB2 (integrin subunit beta 2) [NCBI Gene 3689], CD69 (CD69 molecule) [NCBI Gene 969], CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347], CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351]
- **Chemicals:** omeprazole (PubChem CID 4594)
- **Diseases:** Eosinophilic esophagitis (MONDO:0005361), EoE (MONDO:0005361)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** TGM1 (transglutaminase 1) [NCBI Gene 7051] {aka ARCI1, ICR2, KTG, LI, LI1, TGASE}, POSTN (periostin) [NCBI Gene 10631] {aka OSF-2, OSF2, PDLPOSTN, PN}, IL33 (interleukin 33) [NCBI Gene 90865] {aka C9orf26, DVS27, IL1F11, NF-HEV, NFEHEV}, CCL26 (C-C motif chemokine ligand 26) [NCBI Gene 10344] {aka IMAC, MIP-4a, MIP-4alpha, SCYA26, TSC-1}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, CCN2 (cellular communication network factor 2) [NCBI Gene 1490] {aka CTGF, HCS24, IBP-8, IGFBP8, KMD, NOV2}, CNFN (cornifelin) [NCBI Gene 84518] {aka PLAC8L2}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, ERBIN (erbb2 interacting protein) [NCBI Gene 55914] {aka ERBB2IP, HEL-S-78, LAP2}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CAPN14 (calpain 14) [NCBI Gene 440854], CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, FLG2 (filaggrin 2) [NCBI Gene 388698] {aka IFPS, PSS6}, ATP12A (ATPase H+/K+ transporting non-gastric alpha2 subunit) [NCBI Gene 479] {aka ATP1AL1, H-K-ATPase, HK}, FLG (filaggrin) [NCBI Gene 2312] {aka ATOD2, FLG-1, FLG1}, SERPINB4 (serpin family B member 4) [NCBI Gene 6318] {aka LEUPIN, PI11, SCCA-2, SCCA1, SCCA2}, IVL (involucrin) [NCBI Gene 3713], STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}, Icam1 (intercellular adhesion molecule 1) [NCBI Gene 15894] {aka CD54, Icam-1, Ly-47, MALA-2}, EPC2 (enhancer of polycomb 2) [NCBI Gene 26122] {aka EPC-LIKE}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, DSG1 (desmoglein 1) [NCBI Gene 1828] {aka CDHF4, DG1, DSG, EPKHE, EPKHIA, PPKS1}, WNT10A (Wnt family member 10A) [NCBI Gene 80326] {aka ECTD16, OODD, SSPS, STHAG4}, KRT10 (keratin 10) [NCBI Gene 3858] {aka BCIE, BIE, CK10, EHK, EHK2, EHK2A}, Stat6 (signal transducer and activator of transcription 6) [NCBI Gene 20852], TNFAIP6 (TNF alpha induced protein 6) [NCBI Gene 7130] {aka TSG-6, TSG6}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, TGM5 (transglutaminase 5) [NCBI Gene 9333] {aka PSS2, TG(X), TGASE5, TGASEX, TGMX, TGX}, CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351] {aka ACT2, AT744.1, G-26, HC21, LAG-1, LAG1}, CASP14 (caspase 14) [NCBI Gene 23581] {aka ARCI12, caspase-14}, ALOX12B (arachidonate 12-lipoxygenase, 12R type) [NCBI Gene 242] {aka 12R-LOX, ARCI2}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, IL5 (interleukin 5) [NCBI Gene 3567] {aka EDF, IL-5, TRF}, ITGB2 (integrin subunit beta 2) [NCBI Gene 3689] {aka CD18, LAD, LCAMB, LFA-1, MAC-1, MF17}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, Dsg1a (desmoglein 1 alpha) [NCBI Gene 13510] {aka DG1, DGI, Dsg1, dsg1-alpha}, CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, CEACAM8 (CEA cell adhesion molecule 8) [NCBI Gene 1088] {aka CD66b, CD67, CGM6, NCA-95}, NTRK1 (neurotrophic receptor tyrosine kinase 1) [NCBI Gene 4914] {aka MTC, TRK, TRK1, TRKA, Trk-A, p140-TrkA}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, TP63 (tumor protein p63) [NCBI Gene 8626] {aka AIS, B(p51A), B(p51B), EEC3, KET, LMS}
- **Diseases:** immune-mediated disorder (MESH:C567355), esophageal epithelial abnormalities (MESH:D002277), esophageal eosinophilia (MESH:D004802), Asthma (MESH:D001249), eosinophilic inflammation (MESH:D007249), GERD (MESH:D005764), EoE (MESH:D057765), basal (MESH:D002280), hyperplasia (MESH:D006965), allergic disorder (MESH:D004342), peptic ulcer disease (MESH:D010437), ALI (MESH:D004618)
- **Chemicals:** FITC-Dextran (MESH:C015219), FITC (MESH:D016650), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), paraffin (MESH:D010232), esomeprazole (MESH:D064098), PBS (MESH:D007854), eosin (MESH:D004801), PVDF (MESH:C024865), pantoprazole (MESH:D000077402), DAPI (MESH:C007293), formalin (MESH:D005557), CO2 (MESH:D002245), OM (MESH:D009853), indomethacin (MESH:D007213), AS1517499 (MESH:C544923), AF488 (-), H&amp;E (MESH:D006371), dextran (MESH:D003911), Proton (MESH:D011522), hematoxylin (MESH:D006416), penicillin (MESH:D010406)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HUVEC — Homo sapiens (Human), Finite cell line (CVCL_2959), EPC2-hTERT — Pimephales promelas (Fathead minnow), Spontaneously immortalized cell line (CVCL_4361), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12948656/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12948656/full.md

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Source: https://tomesphere.com/paper/PMC12948656