# Evaluation of the mechanism underlying melatonin action in cholestatic liver disease treatment via network pharmacology, molecular docking, and in vivo experiments

**Authors:** Tao Li, Jiang ZhenYu, Wang Jing

PMC · DOI: 10.1371/journal.pone.0342978 · PLOS One · 2026-02-27

## TL;DR

This study explores how melatonin helps treat cholestatic liver disease by analyzing its effects on key proteins and signaling pathways.

## Contribution

The study combines network pharmacology, molecular docking, and in vivo experiments to reveal melatonin's mechanism in cholestatic liver disease.

## Key findings

- Melatonin showed strong binding affinity for MMP9, EGFR, and AKT1 through molecular docking.
- Melatonin reduced inflammation and fibrosis in cholestatic liver disease in animal experiments.
- Melatonin downregulated MMP9 and upregulated EGFR and AKT, suggesting a protective mechanism.

## Abstract

The aim of this study was to investigate the mechanism underlying the action of melatonin (MT) in treating cholestatic liver disease. Melatonin and therapeutic targets for cholestatic liver disease were screened. A protein–protein interaction network was constructed using intersecting targets. Core targets were subjected to GO and KEGG enrichment analyses. We evaluated core target affinity through molecular docking. Biochemical indicators were measured in a mouse model of cholestasis to determine the pathological changes in liver tissue. The expression of core targets (MMP9, EGFR, and AKT) was detected through western blotting. The core targets for treating cholestatic liver disease included ALB, AKT1, ESR1, CASP3, PPARG, MMP9, PTGS2, SRC, EGFR, and IGF1. The biological processes included lipopolysaccharide stress response, bacterial molecular response, nutrient level response, and regulation of inflammatory response. Additionally, the estrogen, tumor necrosis factor-alpha, and VEGF signaling pathways were enriched in cholestatic liver disease. Molecular docking showed that MT had a strong binding affinity for MMP9, EGFR, and AKT1. Animal experiments demonstrated that melatonin alleviated inflammation and fibrosis in cholestatic liver disease, downregulated MMP9 expression, and upregulated the expression of EGFR, AKT, and phosphorylated AKT. Network pharmacology predictions suggested that these targets are closely associated with the estrogen signaling pathway. In conclusion, the protective effect of melatonin against cholestatic liver injury is likely mediated through the downregulation of MMP9 and upregulation of EGFR/AKT.

## Linked entities

- **Genes:** MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], EGFR (epidermal growth factor receptor) [NCBI Gene 1956], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], ALB (albumin) [NCBI Gene 213], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], ESR1 (estrogen receptor 1) [NCBI Gene 2099], CASP3 (caspase 3) [NCBI Gene 836], PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468], PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743], SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714], IGF1 (insulin like growth factor 1) [NCBI Gene 3479]
- **Chemicals:** melatonin (PubChem CID 896)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Ephb1 (Eph receptor B1) [NCBI Gene 24338] {aka Ephb2, Erk, elk}, Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, Epidermal growth factor [NCBI Gene 108348113], Nr1h4 (nuclear receptor subfamily 1, group H, member 4) [NCBI Gene 60351] {aka Fxr}, Pik3cb (phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta) [NCBI Gene 85243], Gnrhr (gonadotropin releasing hormone receptor) [NCBI Gene 81668] {aka GH1, Lhrhr}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Igf1 (insulin-like growth factor 1) [NCBI Gene 24482] {aka IGF}, Egr1 (early growth response 1) [NCBI Gene 24330] {aka Krox-24, NGFI-A, Ngf1, Ngfi, zif-268}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}, Src (src proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 20779] {aka pp60c-src}, alp (alopecia, recessive) [NCBI Gene 11691], Eln (elastin) [NCBI Gene 25043] {aka RATTREL11, TREL11, Trela, Trela26}, Esr1 (estrogen receptor 1) [NCBI Gene 24890] {aka ER-alpha, Esr, RNESTROR}, Egfr (epidermal growth factor receptor) [NCBI Gene 24329] {aka ERBB1, ErbB-1, Errp}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 81687], Ggh (gamma-glutamyl hydrolase) [NCBI Gene 25455], Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, Esr1 (estrogen receptor 1 (alpha)) [NCBI Gene 13982] {aka ER, ER-alpha, ERa, ERalpha, ESR, Estr}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 83785] {aka VEGF-A, VEGF111, VEGF164, VPF, Vegf}, Akt1 (AKT serine/threonine kinase 1) [NCBI Gene 24185] {aka Akt}, Igf1 (insulin-like growth factor 1) [NCBI Gene 16000] {aka C730016P09Rik, Igf-1, Igf-I}, Fn1 (fibronectin 1) [NCBI Gene 25661] {aka FIBNEC, fn-1}, Abcb11 (ATP binding cassette subfamily B member 11) [NCBI Gene 83569] {aka Bsep, Spgp}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Ptgs2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 19225] {aka COX2, Cox-2, PES-2, PGHS-2, PHS II, PHS-2}, Spp1 (secreted phosphoprotein 1) [NCBI Gene 20750] {aka 2AR, Apl-1, BNSP, BSPI, Bsp, ETA-1}, Nfe2l2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 83619], Slc17a5 (solute carrier family 17 (anion/sugar transporter), member 5) [NCBI Gene 235504] {aka 4631416G20Rik, 4732491M05, AST, ISSD, NSD, SD}, Ripk3 (receptor-interacting serine-threonine kinase 3) [NCBI Gene 246240] {aka Hcyp2, Rip3}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Mlkl (mixed lineage kinase domain like pseudokinase) [NCBI Gene 690743], Ripk1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 306886]
- **Diseases:** Liver fibrosis (MESH:D008103), TBIL (MESH:D007647), DDC (MESH:C537437), pain (MESH:D010146), fibrosis (MESH:D005355), inflammation (MESH:D007249), cholestatic liver disease (MESH:D008107), bile duct blockage (MESH:D001649), extrahepatic and intrahepatic cholestasis (MESH:D001651), bile stasis (MESH:D014647), Cholestasis (MESH:D002779), atherosclerosis (MESH:D050197), cholestatic hepatomegaly (MESH:D006529), Death (MESH:D003643), primary sclerosing cholangitis (MESH:D015209), overdose (MESH:D062787), necrosis (MESH:D009336), PBC (MESH:D008105), dislocation (MESH:D004204), Cholestatic liver injury (MESH:D017093), liver damage (MESH:D056486), collagen (MESH:D003095)
- **Chemicals:** pentobarbital sodium (MESH:D010424), carboxylic acid (MESH:D002264), bilirubin (MESH:D001663), oxygen (MESH:D010100), saline (MESH:D012965), paraffin (MESH:D010232), ethanol (MESH:D000431), SDS (MESH:D012967), 3,5-Diethoxycarbonyl-1,4-dihydrocollidine (MESH:C530773), amino acid (MESH:D000596), Hematoxylin (MESH:D006416), HE (MESH:D006371), BA (MESH:D001647), MT (MESH:D008550), porphyrin (MESH:D011166), ANIT (-), DDC (MESH:D016047), serotonin (MESH:D012701), Chlorogenic acid (MESH:D002726), heparin (MESH:D006493), hydrogen (MESH:D006859), PVDF (MESH:C024865), eosin (MESH:D004801), paraformaldehyde (MESH:C003043), Lipid (MESH:D008055), Lipopolysaccharides (MESH:D008070), steroid (MESH:D013256), UDCA (MESH:D014580), CO2 (MESH:D002245), glutathione (MESH:D005978), AP (MESH:D000667)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12948078/full.md

## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12948078/full.md

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Source: https://tomesphere.com/paper/PMC12948078