# Antimicrobial use and documented infection among hospitalized adults in South American acute care facilities during the coronavirus disease 2019 (COVID-19) pandemic

**Authors:** Lauren F. Dempsey, Hanako Osuka, Olivia L. McGovern, Jose M. Munita, Maria Isabel Garzon, Icaro Boszczowski, Anne Peters, Maria Spencer-Sandino, Matias C. Salomao, Fernanda C. Lessa, Twisha S. Patel

PMC · DOI: 10.1371/journal.pone.0343535 · PLOS One · 2026-02-27

## TL;DR

This study found that hospitalized adults with COVID-19 in South America were not more likely to receive antimicrobials or develop bacterial or fungal infections during the pandemic.

## Contribution

The study provides new evidence that COVID-19 was not linked to increased antimicrobial use or infections in hospitalized patients during the pandemic.

## Key findings

- Patients with COVID-19 were less likely to have culture-positive bacterial or fungal infections.
- Antimicrobial use was not higher in patients with COVID-19 compared to those without.
- Pre-pandemic patients were more likely to receive antimicrobials than those admitted during the pandemic.

## Abstract

Despite low bacterial and fungal infection rates, increased antimicrobial use (AU) among hospitalized patients has been reported during the Coronavirus Disease 2019 (COVID-19) pandemic. We evaluated whether COVID-19 was a driver of AU and documented bacterial or fungal infection.

We conducted a retrospective cohort study in two hospitals each in Argentina, Brazil, and Chile. We included hospitalized adults with and without COVID-19 admitted during the pandemic (March 2020-February 2021) as well as a cohort admitted prior to the pandemic (March 2019-February 2020) with similar age and length of hospitalization. We performed multivariable logistic regressions to compare 1) patients with COVID-19 to those without who were admitted during the pandemic, and 2) patients without COVID-19 who were admitted during the pandemic to a similar patient population before the pandemic to characterize the association of COVID-19 or admission during the pandemic with rates of AU and infections.

A total of 1116 patients were included. During the pandemic, COVID-19 was not associated with receiving antimicrobials or receiving antimicrobials for a duration >48 hours, but it was associated with reduced likelihood of culture-positive bacterial or fungal infection (aOR=0.35, 95% CI: 0.19–0.64, p < 0.001). Compared to patients without COVID-19 admitted during the pandemic, patients admitted prior to the pandemic were more likely to have received antimicrobials (aOR=1.54, 95% CI: 1.15–2.07, p < 0.01), but there was no association with receiving antimicrobials for duration>48 hours or having a culture-positive bacterial or fungal infection.

COVID-19 was not associated with an increased likelihood of AU in this cohort of hospitalized adults.

## Linked entities

- **Diseases:** Coronavirus Disease 2019 (MONDO:0100096), bacterial infection (MONDO:0005113)

## Full-text entities

- **Genes:** CP (ceruloplasmin) [NCBI Gene 1356] {aka AB073614, CP-2}, NPEPPS (aminopeptidase puromycin sensitive) [NCBI Gene 9520] {aka AAP-S, MP100, PSA}
- **Diseases:** pneumonia (MESH:D011014), AU (MESH:D019966), psychiatric (MESH:D001523), AMR (MESH:D060467), ILI (MESH:D007251), systemic infection (MESH:D012141), Comorbidity (MESH:D004194), gram (MESH:D016908), CAP (MESH:D003147), sepsis (MESH:D018805), Bacterial and fungal infection (MESH:D009181), gram-negative bacterial infections (MESH:D016905), Bacterial Infection (MESH:D001424), acquired pneumonia (MESH:D000077299), CP (MESH:D002972), IPC (MESH:D007239), COVID (MESH:D000086382), viral infections (MESH:D014777), bacterial co-infection (MESH:D060085)
- **Chemicals:** tazobactam (MESH:D000078142), moxifloxacin (MESH:D000077266), Carbapenem (MESH:D015780), ceftazidime (MESH:D002442), levofloxacin (MESH:D064704), cefepime (MESH:D000077723), meropenem (MESH:D000077731), ertapenem (MESH:D000077727), beta-lactam antibiotics (MESH:D008997), amoxicillin/clavulanate (MESH:D019980), piperacillin (MESH:D010878), oxygen (MESH:D010100), ceftolozane/tazobactam (MESH:C000594038), azithromycin (MESH:D017963), beta-lactam (MESH:D047090), imipenem (MESH:D015378), ampicillin/sulbactam (MESH:C035444), ceftriaxone (MESH:D002443), aztreonam (MESH:D001398)
- **Species:** Enterobacterales (order) [taxon 91347], Pseudomonas aeruginosa (species) [taxon 287], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

21 references — full list in the complete paper: https://tomesphere.com/paper/PMC12948048/full.md

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Source: https://tomesphere.com/paper/PMC12948048