# The role of gut microbiota in Hirschsprung’s disease: from pathogenic mechanisms to microbiota-targeted therapies

**Authors:** Yuan Zhao, Dehong Chen, Kaiwen Qi

PMC · DOI: 10.7717/peerj.20854 · PeerJ · 2026-02-24

## TL;DR

This review explores how gut microbiota contribute to Hirschsprung’s disease and how targeting them could lead to new treatments.

## Contribution

The paper systematically reviews the role of gut microbiota in HSCR pathogenesis and potential microbiota-targeted therapies.

## Key findings

- HSCR patients show a distinct gut microbial imbalance affecting the intestinal environment and immune status.
- Microbiota-targeted therapies like FMT and probiotics show potential for treating HSCR.
- Gut dysbiosis disrupts the development and function of the enteric nervous system in HSCR.

## Abstract

Hirschsprung’s disease (HSCR) is a common congenital disorder characterized by abnormal enteric nervous system development. Recent studies have demonstrated that gut microbiota and their metabolites play a significant role in the pathogenesis of HSCR. This review systematically examines the interplay between gut dysbiosis and pathophysiological alterations in HSCR, including disruptions in microbial composition, aberrant metabolite profiles, impaired intestinal barrier function, and dysregulated neuro-immune modulation. Research indicates that HSCR patients exhibit a characteristic gut microbial imbalance, which may influence the development and function of the enteric nervous system by altering the intestinal microenvironment, including metabolic profiles and immune status. Furthermore, this review explores the potential therapeutic value of microbiota-targeted interventions, such as probiotics and fecal microbiota transplantation (FMT), in HSCR treatment, providing a theoretical foundation for novel therapeutic strategies. These findings not only enhance the understanding of HSCR pathogenesis but also offer new perspectives for clinical prevention and treatment.

## Linked entities

- **Diseases:** Hirschsprung’s disease (MONDO:0018309), HSCR (MONDO:0018309)

## Full-text entities

- **Genes:** GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, NGF (nerve growth factor) [NCBI Gene 4803] {aka Beta-NGF, HSAN5, NGFB}, CDX2 (caudal type homeobox 2) [NCBI Gene 1045] {aka CDX-3, CDX2/AS, CDX3}, NRG1 (neuregulin 1) [NCBI Gene 3084] {aka ARIA, GGF, GGF2, HGL, HRG, HRG1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, MUC2 (mucin 2, oligomeric mucus/gel-forming) [NCBI Gene 4583] {aka MLP, MUC-2, SMUC}, SOX10 (SRY-box transcription factor 10) [NCBI Gene 6663] {aka DOM, PCWH, SOX-10, WS2E, WS4, WS4C}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, RET (ret proto-oncogene) [NCBI Gene 5979] {aka CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1}, mucin [NCBI Gene 100508689], GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, PIGR (polymeric immunoglobulin receptor) [NCBI Gene 5284], TGFA (transforming growth factor alpha) [NCBI Gene 7039] {aka TFGA}, CDX1 (caudal type homeobox 1) [NCBI Gene 1044], CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, PHOX2B (paired like homeobox 2B) [NCBI Gene 8929] {aka CCHS, NBLST2, NBPhox, PMX2B}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, ISYNA1 (inositol-3-phosphate synthase 1) [NCBI Gene 51477] {aka INO1, INOS, IPS, IPS 1, IPS-1}, GPBAR1 (G protein-coupled bile acid receptor 1) [NCBI Gene 151306] {aka BG37, GPCR19, GPR131, M-BAR, TGR5}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, ECE1 (endothelin converting enzyme 1) [NCBI Gene 1889] {aka ECE}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, EDNRB (endothelin receptor type B) [NCBI Gene 1910] {aka ABCDS, ET-B, ET-BR, ETB, ETB1, ETBR}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, NRTN (neurturin) [NCBI Gene 4902] {aka NTN}, MIR221 (microRNA 221) [NCBI Gene 407006] {aka MIRN221, miRNA221, mir-221}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, EDN3 (endothelin 3) [NCBI Gene 1908] {aka ET-3, ET3, HSCR4, PPET3, WS4B}
- **Diseases:** developmental (MESH:C567924), dysbiosis (MESH:D064806), inflammatory bacteria (MESH:C000719206), Impaired bowel function (MESH:D012778), inflammation (MESH:D007249), HAEC (MESH:D004760), congenital disorder (MESH:D009358), IND) (MESH:C537394), intestinal ganglion cell deficiency (MESH:C567703), HSCR (MESH:D006627), failure to thrive (MESH:D005183), colitis (MESH:D003092), developmental deficits (MESH:D001289), death (MESH:D003643), obstruction of the distal colon (MESH:D015179), GM (MESH:C536735), spasm (MESH:D013035), colonic dysmotility (MESH:D003108), ganglionic hypofunction (MESH:D045888), bloodstream infections (MESH:D018805), infectious complications (MESH:D003141), neuro-immune dysregulation (OMIM:614878), intestinal (MESH:D007410), perforation (MESH:D057112), constipation (MESH:D003248), neuronal damage (MESH:D009410), enteric nervous dysfunction (MESH:D004751), fecal incontinence (MESH:D005242), abdominal distension (MESH:D000007)
- **Chemicals:** propionate (MESH:D011422), fatty acid (MESH:D005227), butyrate (MESH:D002087), SCG (MESH:D004205), bile acid (MESH:D001647), 5-HT (MESH:D012701), SCFA (MESH:D005232), acetate (MESH:D000085), tryptophan (MESH:D014364)
- **Species:** Peptococcus (genus) [taxon 2740], Lactobacillus (genus) [taxon 1578], Prevotella (genus) [taxon 838], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Ruminococcus (genus) [taxon 1263], Enterococcus (genus) [taxon 1350], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Actinomyces (genus) [taxon 1654], Veillonella (genus) [taxon 29465], Clostridioides difficile (species) [taxon 1496], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Staphylococcus (genus) [taxon 1279], Bacteroides (genus) [taxon 816], Fusobacterium (genus) [taxon 848], Eggerthella (genus) [taxon 84111], Bilophila (genus) [taxon 35832], Bacteroidia (class) [taxon 200643], Macellibacteroides (genus) [taxon 1159323], Aspergillus (genus) [taxon 5052], Tannerella (genus) [taxon 195950], Paraprevotella (genus) [taxon 577309], Mogibacterium (genus) [taxon 86331], Pseudomonas (RNA similarity group I, genus) [taxon 286], Bacillota (clostridial firmicutes, phylum) [taxon 1239]

## Full text

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## References

83 references — full list in the complete paper: https://tomesphere.com/paper/PMC12947761/full.md

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Source: https://tomesphere.com/paper/PMC12947761