# Lgr5⁺ cells regulate small intestinal morphogenesis before villification

**Authors:** Lianzheng Zhao, Yuchen Xie, Wanlu Song, Yonghui Shen, Huidong Liu, Shiwen Luo, Ye-Guang Chen

PMC · DOI: 10.1186/s13619-026-00284-y · Cell Regeneration · 2026-02-26

## TL;DR

This study shows that Lgr5⁺ cells in the embryonic small intestine control morphogenesis through region-specific stemness and Hedgehog signaling.

## Contribution

The study reveals the functional roles and stemness properties of embryonic Lgr5⁺ cells prior to villification.

## Key findings

- PVLCs exhibit region-specific stemness with enhanced potential from proximal to distal regions.
- PVLCs regulate intestinal morphogenesis via Hedgehog signaling in a region-dependent manner.
- Distal morphogenesis is more reliant on Hedgehog signaling from PVLCs.

## Abstract

Lgr5 marks both adult intestinal stem cells and embryonic intestinal stem/progenitor cells. However, the stemness properties and physiological roles of embryonic intestinal Lgr5⁺ cells prior to villification (PVLCs) remain largely unknown. In this study, we show that PVLCs in the embryonic small intestine exhibit region-specific stemness, with progressively enhanced stemness potential from the proximal to distal region. Through inducible cell ablation and gene knockout experiments, we demonstrate that PVLCs regulate small intestinal morphogenesis via Hedgehog signaling in a region-dependent manner, with distal morphogenesis being more dependent on this mechanism. This study reveals the stemness and functional roles of PVLCs in the embryonic small intestine prior to villification, highlighting regionalized cellular heterogeneity as a critical determinant of intestinal morphogenesis.

The online version contains supplementary material available at 10.1186/s13619-026-00284-y.

## Linked entities

- **Genes:** LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549]

## Full-text entities

- **Genes:** Ube2c (ubiquitin-conjugating enzyme E2C) [NCBI Gene 68612] {aka 1110015A16Rik, D2Ertd695e}, Muc2 (mucin 2) [NCBI Gene 17831] {aka 2010015E03Rik, MCM, wnn}, Pdgfra (platelet derived growth factor receptor, alpha polypeptide) [NCBI Gene 18595] {aka CD140a, Pdgfr-2}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, Bmi1 (Bmi1 proto-oncogene, polycomb ring finger) [NCBI Gene 12151] {aka Bmi-1, Pcgf4}, Fat4 (FAT atypical cadherin 4) [NCBI Gene 329628] {aka 6030410K14Rik, 9430004M15}, Vangl1 (VANGL planar cell polarity 1) [NCBI Gene 229658] {aka Kitenin, Lpp2, Stb2, Stbm}, Gja1 (gap junction protein, alpha 1) [NCBI Gene 14609] {aka Cnx43, Cx43, Cx43alpha1, Cxnk1, Gja-1, Npm1}, Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Top2a (topoisomerase (DNA) II alpha) [NCBI Gene 21973] {aka Top-2}, Gli1 (GLI-Kruppel family member GLI1) [NCBI Gene 14632] {aka Zfp-5, Zfp5}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Shh (sonic hedgehog) [NCBI Gene 20423] {aka 9530036O11Rik, Dsh, HHG-1, Hhg1, Hx, Hxl3}, SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, CHGA (chromogranin A) [NCBI Gene 1113] {aka CGA, PHE5, PHES}, Rspo1 (R-spondin 1) [NCBI Gene 192199] {aka R-spondin, Rspondin}, Lyz1 (lysozyme 1) [NCBI Gene 17110] {aka Lyz, Lyzf3, Lzp-s}, LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, DHH (desert hedgehog signaling molecule) [NCBI Gene 50846] {aka GDMN, GDXYM, HHG-3, SRXY7}, Lgr5 (leucine rich repeat containing G protein coupled receptor 5) [NCBI Gene 14160] {aka FEX, Gpr49}, Ihh (Indian hedgehog) [NCBI Gene 16147] {aka HHG-2}, Gt(ROSA)26Sor (gene trap ROSA 26, Philippe Soriano) [NCBI Gene 14910] {aka Gtrgeo26, Gtrosa26, R26, ROSA26, Thumpd3as1}, Egf (epidermal growth factor) [NCBI Gene 13645], Hbegf (heparin-binding EGF-like growth factor) [NCBI Gene 15200] {aka Dtr, Dts, Hegfl}, IHH (Indian hedgehog signaling molecule) [NCBI Gene 3549] {aka BDA1, HHG2}, Acd (adrenocortical dysplasia) [NCBI Gene 497652], Smo (smoothened, frizzled class receptor) [NCBI Gene 319757] {aka E130215L21Rik, Smoh, bnb, smoothened}, Cdh1 (cadherin 1) [NCBI Gene 12550] {aka ARC-1, E-cad, Ecad, L-CAM, UVO, Um}, Tpm2 (tropomyosin 2, beta) [NCBI Gene 22004] {aka Tpm-2, Trop-2}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}, MUC2 (mucin 2, oligomeric mucus/gel-forming) [NCBI Gene 4583] {aka MLP, MUC-2, SMUC}, MKI67 (marker of proliferation Ki-67) [NCBI Gene 4288] {aka KIA, MIB-, MIB-1, PPP1R105}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Ptch1 (patched 1) [NCBI Gene 19206] {aka A230106A15Rik, Ptc, Ptc1, Ptch, mes, wig}, Chga (chromogranin A) [NCBI Gene 12652] {aka ChrA, cgA}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}
- **Diseases:** cytotoxic (MESH:D064420), cyst (MESH:D003560), tumor (MESH:D009369), PVLCs (MESH:D015452), developmental defects (MESH:D000094602)
- **Chemicals:** corn oil (MESH:D003314), dUTP (MESH:C027078), Alexa Fluor 488 (MESH:C000711379), A83-01 (MESH:C507011), H&amp;E (MESH:D006371), Y-27632 (MESH:C108830), Alexa Fluor TRITC (-), hydrogen peroxide (MESH:D006861), hematoxylin (MESH:D006416), penicillin (MESH:D010406), N-acetylcysteine (MESH:D000111), PBS (MESH:D007854), eosin (MESH:D004801), 4-OHT (MESH:C032278), DAPI (MESH:C007293), formalin (MESH:D005557), citrate (MESH:D019343), 4-Hydroxytamoxifen (MESH:C016601), CO2 (MESH:D002245), paraformaldehyde (MESH:C003043), sucrose (MESH:D013395), N2 (MESH:D009584), TAM (MESH:D013629), xylene (MESH:D014992), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), ammonia (MESH:D000641), ascorbic acid (MESH:D001205), GlutaMAX (MESH:C054122), ethanol (MESH:D000431), water (MESH:D014867), TRIzol (MESH:C411644), CHIR-99021 (MESH:C473711)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12946557/full.md

## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12946557/full.md

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Source: https://tomesphere.com/paper/PMC12946557