# Genetic architecture and clinical features of Tourette syndrome in a child and adolescent cohort: an explorative clinical exome-based study

**Authors:** Federica Saia, Federica Mirabella, Andrea Longhitano, Nicoletta Maugeri, Rita Barone, Renata Rizzo

PMC · DOI: 10.3389/fpsyt.2026.1744145 · Frontiers in Psychiatry · 2026-02-13

## TL;DR

This study explores how genetic variants in children and adolescents with Tourette Syndrome relate to their clinical symptoms and severity.

## Contribution

The study identifies a dual model of genetic susceptibility in Tourette Syndrome involving rare high-impact variants and polygenic inheritance.

## Key findings

- Patients with potentially causative variants had higher tic severity and lower IQ compared to others.
- Positive family history of tics was more common in patients with non-causative variants.
- Causative variants were found in genes related to synaptic transmission, ion channels, and neurodevelopmental pathways.

## Abstract

Tourette Syndrome (TS) is a neurodevelopmental disorder with a complex genetic architecture, involving both rare high-impact variants and polygenic contributions. While several risk genes have been identified by whole-exome sequencing (WES), the relationship between genetic variants and clinical phenotype in TS patients remains insufficiently characterized.

We conducted an explorative clinical exome-based study in a cohort of 80 children and adolescents with TS (mean age 12.8 years; male:female = 70:10). Variants were classified as potentially causative (PC-Vs), variants of uncertain significance (VUS), or non-causative (NC-Vs) according to ACMG guidelines for variant evaluation and curated databases. Clinical assessment included tic severity through Yale Global Tic Severity Scale (YGTSS), cognitive testing, dysmorphic features, comorbid conditions, EEG and brain MRI analyses. Group comparisons were statistically performed to evaluate associations between genetic findings and phenotypic features.

Out of the 80 patients, 11 (13.7%) carried PC-Vs, 29 (36.3%) VUS, and 40 (50%) NC-Vs. Patients with PC-Vs exhibited significantly higher tic severity (mean YGTSS 28 ± 8.2) and lower IQ (67.6 ± 31.0) compared with VUS (YGTSS 24.2 ± 7.7; IQ 90.8 ± 23.1) and NC-Vs (YGTSS 18.5 ± 7.0; IQ 86.4 ± 20.3) (p < 0.05). Conversely, positive family history of tics was more frequent in the NC-V group (55%) than in PC-Vs (27.3%) or VUS (27.6%) (p = 0.044). Potential causative variants included de novo or inherited mutations in genes implicated in synaptic transmission (PNKD, SLC6A1), ion channels (CACNA1D), chromatin remodeling (BRPF1, KMT2C, SMARCA2), and pleiotropic neurodevelopmental pathways (PTEN, RERE).

These findings support a dual model of genetic susceptibility in TS, where rare, high-impact exomic variants may contribute to more severe tics, cognitive impairment, and syndromic presentations, whereas polygenic inheritance mostly occurs in familial and milder forms. Incorporating exome sequencing into diagnostic workflows may enhance etiological classification and inform precision-medicine strategies for TS.

## Linked entities

- **Genes:** PNKD (PNKD metallo-beta-lactamase domain containing) [NCBI Gene 25953], SLC6A1 (solute carrier family 6 member 1) [NCBI Gene 6529], CACNA1D (calcium voltage-gated channel subunit alpha1 D) [NCBI Gene 776], BRPF1 (bromodomain and PHD finger containing 1) [NCBI Gene 7862], KMT2C (lysine methyltransferase 2C) [NCBI Gene 58508], SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595], PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], RERE (arginine-glutamic acid dipeptide repeats) [NCBI Gene 473]
- **Diseases:** Tourette Syndrome (MONDO:0007661)

## Full-text entities

- **Genes:** ZMYM2 (zinc finger MYM-type containing 2) [NCBI Gene 7750] {aka FIM, MYM, NECRC, RAMP, SCLL, ZNF198}, CACNA1D (calcium voltage-gated channel subunit alpha1 D) [NCBI Gene 776] {aka CACH3, CACN4, CACNL1A2, CCHL1A2, Cav1.3, PASNA}, RERE (arginine-glutamic acid dipeptide repeats) [NCBI Gene 473] {aka ARG, ARP, ATN1L, DNB1, NEDBEH}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595] {aka BAF190, BIS, BRM, NCBRS, SAMRCA2, SNF2}, ASH1L (ASH1 like histone lysine methyltransferase) [NCBI Gene 55870] {aka ASH1, ASH1L1, KMT2H, MRD52}, KMT2C (lysine methyltransferase 2C) [NCBI Gene 58508] {aka HALR, KLEFS2, MLL3}, CELSR3 (cadherin EGF LAG seven-pass G-type receptor 3) [NCBI Gene 1951] {aka ADGRC3, CDHF11, EGFL1, FMI1, HFMI1, MEGF2}, PNKD (PNKD metallo-beta-lactamase domain containing) [NCBI Gene 25953] {aka BRP17, DYT8, FKSG19, FPD1, KIPP1184, MR-1}, RELN (reelin) [NCBI Gene 5649] {aka ETL7, LIS2, PRO1598, RL}, BRPF1 (bromodomain and PHD finger containing 1) [NCBI Gene 7862] {aka BR140, IDDDFP}, SLC20A2 (solute carrier family 20 member 2) [NCBI Gene 6575] {aka GLVR-2, GLVR2, IBGC1, IBGC2, IBGC3, MLVAR}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, ANKRD17 (ankyrin repeat domain 17) [NCBI Gene 26057] {aka CAGS, GTAR, MASK2, NY-BR-16}, NIPBL (NIPBL cohesin loading factor) [NCBI Gene 25836] {aka CDLS, CDLS1, IDN3, IDN3-B, Scc2}, MAPK8IP3 (mitogen-activated protein kinase 8 interacting protein 3) [NCBI Gene 23162] {aka JIP-3, JIP3, JSAP1, NEDBA, SYD2, syd}, SLC6A1 (solute carrier family 6 member 1) [NCBI Gene 6529] {aka GABATHG, GABATR, GAT1, MAE, hGAT-1}, WWC1 (WW and C2 domain containing 1) [NCBI Gene 23286] {aka HBEBP3, HBEBP36, KIBRA, MEMRYQTL, PPP1R168}
- **Diseases:** PC-V (MESH:C537245), seizures (MESH:D012640), metabolic diseases (MESH:D008659), OMIM (MESH:D030342), neurological alterations (MESH:D009461), Neurodevelopmental Disorders (MESH:D002658), MRI anomalies (MESH:C564543), Nicolaides-Baraitser syndrome (MESH:C536116), NC-Vs (OMIM:617025), Tic (MESH:D020323), Dysmorphic traits (MESH:C567520), movement disorders (MESH:D009069), anxiety disorders (MESH:D001008), cognition (MESH:D003072), neurodevelopmental impairment (MESH:D009422), NC-V (MESH:C580335), HGMD (MESH:C579880), macrocephaly (MESH:D058627), OCD (MESH:D009771), VUS (MESH:D065309), learning disorder (MESH:D007859), brain calcification (MESH:C536275), behavioral disturbances (MESH:D001523), TS (MESH:D005879), calcifications (MESH:D002114), ADHD (MESH:D001289), primary (MESH:D010538), dysmorphic (MESH:D057215), neuropsychiatric (MESH:C000631768), ODD (MESH:D019958), ASD (MESH:D001321), tic disorders (MESH:D013981), anxiety (MESH:D001007), atrophic alterations (MESH:D020966), headache (MESH:D006261), EEG abnormalities (MESH:D000014), epilepsy (MESH:D004827), PC (MESH:D015324), axonal transport dysfunction (MESH:D007706), PTEN hamartoma tumor syndrome (MESH:D006223), brain anomalies (MESH:D001927), impaired intellectual functioning (MESH:D008607), ID (MESH:C537985)
- **Chemicals:** phenol (MESH:D019800)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.3439G>A, Arg427Cys, Arg181Trp, p.(Ile1309_Glu1318del), c.3299G>T, c.1545C>G, c.1195C>G, c.1003C>T, Arg2321Cys, Arg1100Leu, p.(Asp515Glu), c.3925_3954del, c.1126C>T, Cys399Arg

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## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12946004/full.md

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Source: https://tomesphere.com/paper/PMC12946004