# Risk stratification by donor-derived cell-free DNA: a three-year single center study of kidney transplant outcomes from 257 patients

**Authors:** Rhys Mendel, Kabir Jalal, Lin Liu, Ying Huang, Cynthia Wan, Eric Zou, Olivia Sorci, Kanishka Mohib, Samer Kareem, John E. Tomaszewski, Jon R. Von Visger, Richard Quigg, Shirley Chang, Xiaoyan Wu

PMC · DOI: 10.3389/fimmu.2026.1737024 · Frontiers in Immunology · 2026-02-13

## TL;DR

This study shows that higher levels of donor-derived cell-free DNA in blood are linked to worse outcomes in kidney transplant patients, including rejection and reduced graft survival.

## Contribution

The study demonstrates the clinical utility of dd-cfDNA as a biomarker for predicting alloimmune risk and graft outcomes in kidney transplant recipients.

## Key findings

- Patients with dd-cfDNA ≥1.0% had increased rejection rates, severe injury, and higher donor-specific antibody prevalence.
- Higher dd-cfDNA levels were associated with reduced graft function and survival (p=0.0071).
- A logistic regression model showed eGFR decline in the >1.0% group predicted long-term graft failure (p=0.04).

## Abstract

Donor-derived cell-free DNA is an established blood-based biomarker used to assess alloimmune activity after kidney transplantation.

We performed a retrospective study of 257 kidney transplant recipients that had at least one dd-cfDNA measurements during 3-year period. The primary aim was to assess the association between dd-cfDNA levels with graft function and survival. Secondary exploratory aims included examining the relationships between dd-cfDNA strata and biopsy-proven rejection, donor-specific antibodies, C4d deposition, and longitudinal eGFR trajectories. Patients were stratified by their highest dd-cfDNA measurement into three groups: <0.50%, 0.50–0.99%, and ≥1.0%.

Patients categorized in the ≥1.0% dd-cfDNA group had increased rates of rejection, more severe histopathologic injury, and a higher prevalence of DSAs. With the ≥ 0.50-0.90% dd-cfDNA group having greater variability and decline in eGFR over the 3 year period. In exploratory multivariable modeling, higher dd-cfDNA strata were associated with a decline in graft function and survival.

Elevated dd-cfDNA levels were associated with adverse alloimmune and functional outcomes, including rejection, DSA positivity, and reduced graft survival (p=0.0071). A logistic regression model identified eGFR decline in the >1.0% group to predict long-term graft failure and patient survival (p=0.04). These findings support the clinical value of dd-cfDNA as a biomarker of alloimmune risk in kidney transplant recipients.

## Full-text entities

- **Genes:** HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}
- **Diseases:** injury (MESH:D014947), Chronic Kidney Disease (MESH:D051436), malignancy (MESH:D009369), DM (MESH:D003920), decline in renal function (MESH:D060825), kidney failure (MESH:D051437), allograft dysfunction (MESH:D000092122), FSGS (MESH:D005923), proteinuria (MESH:D011507), DSA (MESH:D000080888), IgA nephropathy (MESH:D005922), chronic injury (MESH:D020208), viral infections (MESH:D014777), Death (MESH:D003643), HTN (MESH:D006973), ESKD (MESH:D007676), CKD (MESH:D012080), kidney (MESH:D007674), PKD (MESH:D007690)
- **Chemicals:** cPRA (-), dd (MESH:C007792), creatinine (MESH:D003404)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945818/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945818/full.md

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Source: https://tomesphere.com/paper/PMC12945818