# ATP-sensitive peptide-based coacervates for intracellular delivery of therapeutic oligonucleotides

**Authors:** Tatiana Vedekhina, Vladislav Anufriev, Nicole Polischuk, Elizaveta Malakhova, Sabina Alieva, Viacheslav Severov, Margarita Bogomiakova, Pavel Bobrovsky, Anna Varizhuk

PMC · DOI: 10.3389/fmolb.2026.1767656 · Frontiers in Molecular Biosciences · 2026-02-13

## TL;DR

Researchers developed ATP-sensitive peptide-based coacervates that can deliver therapeutic oligonucleotides into cells, showing promise for molecular medicine.

## Contribution

A novel ATP-responsive peptide scaffold for coacervates that enables controlled intracellular release of oligonucleotides.

## Key findings

- ATP-sensitive coacervates partially release oligonucleotides in ATP-rich environments.
- Coacervates penetrate HEK293 cells and release oligonucleotides into the cytoplasm over 20 hours.
- The ATP-sensitive coacervates outperformed controls in delivering specific oligonucleotides.

## Abstract

Despite advances in the fields of lipoplexes, metal nanoparticles, and other nucleic acid carriers, intracellular delivery of DNA/RNA therapeutics remains a pressing area of molecular medicine. The existing delivery systems have limitations in terms of stability, efficacy, or toxicity. Peptide-based coacervates have recently emerged as a promising alternative. They offer several advantages, including easy DNA/RNA incorporation, low toxicity, and the ability to penetrate membranes. However, they have one main drawback: inefficient intracellular unpacking. In this study, we present a novel approach to programmed drug release from peptide-based coacervates. We used a previously described intrinsically disordered histidine-rich peptide as a coacervate scaffold and introduced a viral or human protein-derived ATP-responsive module into its sequence. We assembled the coacervates by mixing the resulting peptides with RNA and a model oligonucleotide (ODN), plasmid DNA, or mRNA in a pseudophysiological buffer. The admixtures of labeled peptides and ODN enabled monitoring coacervate formation and dynamics using fluorescence microscopy. The coacervates were relatively stable in ATP-free environments and underwent rearrangements involving the partial release of the ODN in the presence of ATP. The coacervates penetrated HEK293 cells within 4 hours and released the ODN into the cytoplasm within 20 h. They were inferior to the ATP-insensitive (control) peptide in delivery assays with plasmid DNA and mRNA but outperformed the control peptide in assays with the ODN. Our preliminary results suggest that ATP-sensitive coacervates have potential as ODN carriers.

## Full-text entities

- **Genes:** HFM1 (helicase for meiosis 1) [NCBI Gene 164045] {aka MER3, POF9, SEC63D1, Si-11, Si-11-6, helicase}, HBB (hemoglobin subunit beta) [NCBI Gene 3043] {aka CD113t-C, ECYT6, beta-globin}, HEBP1 (heme binding protein 1) [NCBI Gene 50865] {aka HBP, HEBP}
- **Diseases:** allergy (MESH:D004342), mycoplasma infection (MESH:D009175), Cytotoxicity (MESH:D064420), EM (MESH:D014012), tumor (MESH:D009369)
- **Chemicals:** lipid (MESH:D008055), Peptide (MESH:D010455), agarose (MESH:D012685), ODN (MESH:D009838), ATP (MESH:D000255), water (MESH:D014867), ampicillin (MESH:D000667), glutamine (MESH:D005973), glutathione (MESH:D005978), CO2 (MESH:D002245), Poly(A) (MESH:D011061), argon (MESH:D001128), Gly (MESH:D005998), PBS (MESH:D007854), oligonucleotide (MESH:D009841), biotin (MESH:D001710), Lys (MESH:D008239), hydrogen (MESH:D006859), phosphate (MESH:D010710), disulfide (MESH:D004220), penicillin (MESH:D010406), metal (MESH:D008670), FITC (-), NaCl (MESH:D012965), Imetelstat (MESH:C519562), agar (MESH:D000362), streptomycin (MESH:D013307), Lipofectamine (MESH:C086724), amino acid (MESH:D000596), His (MESH:D006639)
- **Species:** Human betaherpesvirus 5 (no rank) [taxon 10359], Cytomegalovirus (genus) [taxon 10358], human papillomavirus 11 (serotype) [taxon 10580], Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Mutations:** M13F, M13R, start/stop, GGGTTA)3GGG
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HEK-293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945794/full.md

## References

41 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945794/full.md

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Source: https://tomesphere.com/paper/PMC12945794