# KIFC1 is Associated With Sarcomatoid Differentiation, Immune Response, and a Poor Prognosis in Clear Cell Renal Cell Carcinoma

**Authors:** Yoshinori Nakano, Yohei Sekino, Go Kobayashi, Hikaru Nakahara, Shintaro Akabane, Kenshiro Takemoto, Miki Naito, Shunsuke Miyamoto, Kohei Kobatake, Hiroyuki Kitano, Keisuke Goto, Akihiro Goriki, Keisuke Hieda, Takao Hinoi, Nobuyuki Hinata

PMC · DOI: 10.1002/cam4.71687 · Cancer Medicine · 2026-02-26

## TL;DR

High KIFC1 levels in kidney cancer are linked to worse survival, aggressive tumor features, and immune response, suggesting it could be a new target for treatment.

## Contribution

This study identifies KIFC1 as a novel prognostic biomarker and potential therapeutic target in clear cell renal cell carcinoma.

## Key findings

- High KIFC1 expression correlates with poor survival and advanced tumor stage in clear cell renal cell carcinoma.
- KIFC1 is linked to immune response pathways and resistance to targeted therapies in kidney cancer.
- KIFC1 is associated with sarcomatoid differentiation and epithelial–mesenchymal transition in ccRCC.

## Abstract

Centrosome clustering is a cancer‐specific adaptation that allows cells with centrosome amplification to evade mitotic catastrophe and has emerged as a potential therapeutic target. We analyzed the prognostic role of several molecules related to centrosome clustering and found that Kinesin Family Member C1 (KIFC1) was strongly associated with a poor prognosis. KIFC1, a kinesin motor protein, plays a central role in centrosome clustering. However, its biological and clinical significance in clear cell renal cell carcinoma (ccRCC) remains poorly understood.

We conducted a comprehensive analysis using several public datasets (TCGA KIRC, JAVELIN101, IMmotion151, and others) and a Hiroshima ccRCC cohort (n = 110) to evaluate the expression of KIFC1, clinicopathological associations, the prognosis, and treatment response. Gene Set Enrichment Analysis was performed to explore associated pathways.

Immunohistochemical and in silico analyses showed that high KIFC1 expression was significantly associated with high tumor grade, advanced TNM stage, and sarcomatoid differentiation. A multivariate analysis demonstrated that the high‐expression of KIFC1 was independently associated with poor overall survival. Gene Set Enrichment Analysis revealed enrichment of epithelial–mesenchymal transition and interferon gamma response pathways in KIFC1‐high tumors. The expression of KIFC1 was also correlated with TKI resistance, immune response, high clonal neoantigen load, and BAP1 mutation.

KIFC1 serves as a multifunctional molecule linking epithelial–mesenchymal transition, immune modulation, and treatment resistance. It may be a promising prognostic biomarker and therapeutic target in ccRCC, warranting further functional and clinical investigation.

## Linked entities

- **Genes:** KIFC1 (kinesin family member C1) [NCBI Gene 3833], BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314]
- **Proteins:** KIFC1 (kinesin family member C1)
- **Diseases:** clear cell renal cell carcinoma (MONDO:0005005), ccRCC (MONDO:0007763)

## Full-text entities

- **Genes:** NEK6 (NIMA related kinase 6) [NCBI Gene 10783] {aka SID6-1512}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, TACC3 (transforming acidic coiled-coil containing protein 3) [NCBI Gene 10460] {aka ERIC-1, ERIC1, Tacc4, maskin}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, MYH9 (myosin heavy chain 9) [NCBI Gene 4627] {aka BDPLT6, DFNA17, EPSTS, FTNS, MATINS, MHA}, TENM1 (teneurin transmembrane protein 1) [NCBI Gene 10178] {aka ODZ1, ODZ3, TEN-M1, TEN1, TNM, TNM1}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, TCF4 (transcription factor 4) [NCBI Gene 6925] {aka CDG2T, E2-2, FCD2, FECD3, ITF-2, ITF2}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, KIFC1 (kinesin family member C1) [NCBI Gene 3833] {aka HSET, KNSL2}, CD101 (CD101 molecule) [NCBI Gene 9398] {aka EWI-101, IGSF2, V7}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, CCP110 (centriolar coiled-coil protein 110) [NCBI Gene 9738] {aka CP110, Cep110}, PLK4 (polo like kinase 4) [NCBI Gene 10733] {aka MCCRP2, SAK, STK18}, BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}, SETD2 (SET domain containing 2, histone lysine methyltransferase) [NCBI Gene 29072] {aka HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, PBRM1 (polybromo 1) [NCBI Gene 55193] {aka BAF180, PB1, RCC, SMARCH1}, TOX (thymocyte selection associated high mobility group box) [NCBI Gene 9760] {aka TOX1}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, VHL (von Hippel-Lindau tumor suppressor) [NCBI Gene 7428] {aka HRCA1, RCA1, VHL1, pVHL}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, HMGA1 (high mobility group AT-hook 1) [NCBI Gene 3159] {aka HMG-R, HMGA1A, HMGIY}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, E2F1 (E2F transcription factor 1) [NCBI Gene 1869] {aka E2F-1, RBAP1, RBBP3, RBP3}
- **Diseases:** Renal Cancer (MESH:D007680), neuroblastoma (MESH:D009447), inflammatory (MESH:D007249), Cancer (MESH:D009369), lymph node metastasis (MESH:D008207), autosomal dominant polycystic kidney disease (MESH:D016891), CIN (MESH:D043171), cyst (MESH:D003560), Clear Cell Renal Cell Carcinoma (MESH:D002292), abnormalities (MESH:D000014), metastasis (MESH:D009362), immunodeficiency (MESH:D007153)
- **Chemicals:** tyrosine (MESH:D014443), IMmotion151 (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** GU16-260 — Homo sapiens (Human), Finite cell line (CVCL_L934), E-MTAB-3267 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_UA86), KEYNOTE-564 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_JM98), JAVELIN101 — Mus musculus (Mouse), Hybridoma (CVCL_J815), VMUC-RCW — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1790), IMmotion151 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_UI49), -MTAB-6692 — Homo sapiens (Human), Down syndrome, Finite cell line (CVCL_WY36)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945555/full.md

## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945555/full.md

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Source: https://tomesphere.com/paper/PMC12945555