# Efficacy of Multivalent Dengue Vaccine Candidates Predicted In Silico

**Authors:** Seokhwan Hyeon, Kwangwook Kim, Yoo Jin Na, Mihee Kim, Jaenam Jeong, Byung Chul Kim, Yookyoung Lee

PMC · DOI: 10.3390/vaccines14020114 · Vaccines · 2026-01-25

## TL;DR

Researchers predicted and tested dengue vaccine candidates in silico and found some peptides that effectively stimulate immune responses in mice.

## Contribution

The study introduces a computational and experimental approach to identify multivalent dengue vaccine candidates based on immunogenic epitopes.

## Key findings

- Candidate peptides with a score >0.1 induced strong T-cell proliferation and cytokine regulation in mice.
- Some peptides stimulated cellular immunity confirmed by plaque reduction neutralization tests.
- Selected epitopes from envelope domain III showed high immunogenic potential in both in vitro and in vivo models.

## Abstract

Background: Dengue virus (DENV) is becoming a global public health problem, but the immunogenicity of DENV structural proteins is not fully understood. Methods: We predicted the epitope-based immunogenicity of DENV proteins from four serotypes in silico and evaluated their efficacy in vitro (T-cell proliferation assays) and in vivo (ELISpot, qRT-PCR, and plaque reduction neutralization tests using murine splenocytes). We focused on the envelope protein, which contains envelope domain III. Immunogenic B-cell epitopes were predicted using BepiPred-2.0, and regions that induce T cell-mediated immune responses were analyzed using the immune epitope database (IEDB), which validates peptides presented on HLA class I. Results: Nine-amino-acid peptide candidates were selected based on a score of >0.1. The best peptide candidates were tested in T-cell proliferation assays to confirm the in silico data. Subsequently, BALB/c mice were vaccinated with candidate peptides showing immunity in the proliferation assay, and their splenocytes were analyzed. ELISpot and qRT-PCR data showed that some candidate peptides highly regulated cytokines, including interferon-γ, tumor necrosis factor-α, and interleukin-4. Murine sera were collected after peptide boosting 2 weeks apart. Stimulation of cellular immunity was confirmed for some candidates in plaque reduction neutralization tests.

## Linked entities

- **Proteins:** envelope protein (envelope protein), IL4 (interleukin 4)
- **Diseases:** dengue (MONDO:0005502)

## Full-text entities

- **Genes:** Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Fcgr2b (Fc receptor, IgG, low affinity IIb) [NCBI Gene 14130] {aka CD32, F630109E10Rik, Fc[g]RII, FcgRII, Fcgr2, Fcgr2a}, Mela (melanoma antigen) [NCBI Gene 17276] {aka 80kDa, Ag, env, gag, gag-pol, pol}, Fcgr3 (Fc receptor, IgG, low affinity III) [NCBI Gene 14131] {aka CD16}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, Ivns1abp (influenza virus NS1A binding protein) [NCBI Gene 117198] {aka 1190004M08Rik, 1700126I16Rik, HSPC068, ND1, NS-1, NS1-BP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Fcr (Fc receptor) [NCBI Gene 109615]
- **Diseases:** bleeding (MESH:D006470), Dengue fever (MESH:D003715), viremia (MESH:D014766), fever (MESH:D005334), inflammation (MESH:D007249), dengue hemorrhagic fever (MESH:D019595), injury to (MESH:D014947), viral (MESH:D014777), infection (MESH:D007239)
- **Chemicals:** water (MESH:D014867), CO2 (MESH:D002245), sodium azide (MESH:D019810), paraformaldehyde (MESH:C003043), Alhydrogel (MESH:D000536), agarose (MESH:D012685), PBS (MESH:D007854), polyvinylidene difluoride (MESH:C024865), ethanol (MESH:D000431), BV421 (-), brefeldin A (MESH:D020126), crystal violet (MESH:D005840), acids (MESH:D000143), 5-bromo-4-chloro-3-indolyl phosphate (MESH:C035455), penicillin (MESH:D010406), Nitro blue tetrazolium (MESH:D009580), streptomycin (MESH:D013307)
- **Species:** Dengue virus (no rank) [taxon 12637], Aedes albopictus (Asian tiger mosquito, species) [taxon 7160], Aedes aegypti (yellow fever mosquito, species) [taxon 7159], Cercopithecidae (monkey, family) [taxon 9527], Dothidea sp. ENV1 (species) [taxon 154308], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** hPBMC — Homo sapiens (Human), Primary hyperoxaluria type I, Induced pluripotent stem cell (CVCL_DQ61), Vero E6 — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0574), /c — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_9103), Balb/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945253/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945253/full.md

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Source: https://tomesphere.com/paper/PMC12945253