# Enhancing Vaccine Immunogenicity of H9N2 Influenza HA by Locking Its Pre-Fusion Conformation via Cleavage Site Engineering

**Authors:** Xiaoyu Xu, Weihuan Shao, Kehui Zhang, Meimei Wang, Mingqing Wu, Yixiang Wang, Guanlong Xu, Zhaofei Wang, Yuqiang Cheng, Heng’an Wang, Yaxian Yan, Jingjiao Ma, Jianhe Sun

PMC · DOI: 10.3390/vetsci13020147 · Veterinary Sciences · 2026-02-03

## TL;DR

This study shows that modifying the cleavage site of the H9N2 influenza HA protein can enhance vaccine immunogenicity by stabilizing its pre-fusion conformation.

## Contribution

The novel finding is that a specific deletion mutant (Dlt5) of HA with reduced cleavage efficiency elicits stronger antibody responses in mice.

## Key findings

- The Dlt5 mutant HA with reduced cleavage efficiency induced significantly higher HI antibody titers in mice.
- Stabilizing the pre-fusion conformation of HA through cleavage site engineering enhances its immunogenicity.
- Modifying HA cleavage properties offers a strategy to improve avian influenza vaccine efficacy.

## Abstract

The hemagglutinin (HA) protein of influenza A virus is cleaved into HA1 and HA2 subunits during maturation. However, whether the subsequent conformational change alters HA immunogenicity remains unclear. In this study, we identified a circular loop structure flanking the cleavage site that is critical for HA expression (P7~P1, P′1~P′12). We generated a panel of mutants that either increased or decreased the cleavage efficiency of the HA0 precursor. To investigate the impact of conformational change on immunogenicity, we assessed these HA variants in a mouse model. Specifically, the Dlt5 (P6~P1, P′1~P′13) mutant reduced cleavage efficiency, resulting in elicited immunogenicity and significantly higher antibody titers in mice. In contrast, all other cleavable mutants induced similar antibody levels, suggesting the stabilized, conformationally locked HA protein possesses greater immunogenicity.

Avian influenza (AI) significantly threatens poultry health and causes major economic losses in the poultry industry. Vaccination remains crucial for AI prevention and control. The major protective epitopes of influenza viruses are located on hemagglutinin (HA), a surface glycoprotein essential for viral infection. Most influenza vaccines induce neutralizing antibodies against HA to block viral entry. HA maturation requires the HA0 precursor to be proteolytically cleaved at a conserved site by host proteases to yield HA1 and HA2 subunits. A subsequent acidic condition triggers HA conformational changes, enabling viral–host membrane fusion. However, whether HA conformational variations affect immunogenicity remains unclear. In this study, the cleavage site of the HA gene from an H9N2 avian influenza virus was modified to block the proteolytic cleavage of the HA protein. Our results revealed distinct proteolytic patterns of certain mutants, which exhibited either increased or decreased cleavage efficiencies compared to the wild-type (WT) HA. However, none of the mutants exhibited completely abolished HA0 cleavage. To assess the immunogenicity of these variants, BALB/c mice were immunized with DNA vaccines expressing either WT or mutant HA proteins. Strikingly, the mutant HA protein with a 19-amino-acid deletion Dlt5 (P6~P1, P1’~P′13) at the cleavage site exhibited reduced cleavage efficiency and induced significantly higher HI antibody titers compared to the WT. These results offer valuable perspectives for enhancing avian influenza vaccine efficacy through strategic modification of HA cleavage properties.

## Linked entities

- **Genes:** ha (hair bristles) [NCBI Gene 251217], KRT31 (keratin 31) [NCBI Gene 3881], KRT32 (keratin 32) [NCBI Gene 3882]
- **Diseases:** avian influenza (MONDO:0018695)

## Full-text entities

- **Genes:** TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, NEU1 (neuraminidase 1) [NCBI Gene 4758] {aka NANH, NEU, SIAL1}, Glul (glutamate-ammonia ligase) [NCBI Gene 14645] {aka GS, Glns}, FURIN (furin, paired basic amino acid cleaving enzyme) [NCBI Gene 5045] {aka FUR, PACE, PCSK3, SPC1}, KLK12 (kallikrein related peptidase 12) [NCBI Gene 43849] {aka KLK-L5, KLKL5}, KLK5 (kallikrein related peptidase 5) [NCBI Gene 25818] {aka KLK-L2, KLKL2, SCTE}, TMPRSS4 (transmembrane serine protease 4) [NCBI Gene 56649] {aka CAP2, CAPH2, MT-SP2, TMPRSS3}
- **Diseases:** injury to (MESH:D014947), AI (MESH:D005585), respiratory disease (MESH:D012140), viral infection (MESH:D014777), infection (MESH:D007239)
- **Chemicals:** SDS (MESH:D012967), glycine (MESH:D005998), Zoletil (MESH:C006131), PVDF (MESH:C024865), A2025419 (-), amino acids (MESH:D000596)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], unidentified influenza virus (species) [taxon 11309], Gallus gallus (bantam, species) [taxon 9031], H5N1 subtype (serotype) [taxon 102793], Influenza A virus (no rank) [taxon 11320], Orthomyxoviridae (family) [taxon 11308], Hepatovirus A (no rank) [taxon 12092], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G339E, R343V, S337K, R338V, R329Q, A334S, R335T, R344V, S336Y, R338Q, S336K, F341S, S337I, R338T, L340G
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945172/full.md

## References

25 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945172/full.md

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Source: https://tomesphere.com/paper/PMC12945172