# ADP-Ribosylation of Cytidine: A Novel Nucleic Acid Modification Reversed by NADAR Hydrolases

**Authors:** Petra Mikolčević, Andrea Hloušek-Kasun, Marion Schuller, Yang Lu, Elena Pirović, Ivan Ahel, Andreja Mikoč

PMC · DOI: 10.3390/toxins18020082 · Toxins · 2026-02-06

## TL;DR

Scientists discovered a new type of nucleic acid modification involving cytidine, which can be reversed by specific enzymes across different species.

## Contribution

The study identifies ADP-ribosylation of cytidine as a novel modification and shows its reversal by NADAR hydrolases.

## Key findings

- ADP-ribosylation of cytidine is catalyzed by pierisin family toxins like ScARP and Scabin.
- NADAR proteins from diverse species can reverse cytidine ADP-ribosylation.
- The conservation of this activity suggests physiological importance of the modification.

## Abstract

ADP-ribosylation of nucleic acids is a modification found in both eukaryotes and bacteria, where it contributes to genome maintenance but can also serve as a toxic mechanism used by bacterial toxins to disrupt essential cellular processes. This modification is catalysed by ADP-ribosyltransferases and can be reversed by antagonistic ADP-ribosylgylcohydrolase enzymes. To date, ADP-ribosylation of nucleic acid bases has been described only for adenosine, guanosine, and thymidine. Here we report the ADP-ribosylation of cytidine, catalysed by members of the pierisin family of bacterial toxins—ScARP (SCO5461) and Scabin. We also show that ADP-ribosylation of cytidine is reversible through removal by certain NADAR family proteins, including NADAR proteins from the bacterium Streptomyces coelicolor (SCO5665) and the sponge Amphimedon queenslandica, as well as YbiA-type NADAR proteins. The conservation of cytidine de-ADP-ribosylating activity of NADAR proteins across phylogenetically distant species suggests that this modification may have important physiological significance.

## Linked entities

- **Genes:** ybiA (N-glycosidase YbiA) [NCBI Gene 945426]
- **Species:** Streptomyces coelicolor (taxon 1902), Amphimedon queenslandica (taxon 400682)

## Full-text entities

- **Genes:** Hydrolase [NCBI Gene 7701420], PARG [NCBI Gene 5962040], PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, YbiA [NCBI Gene 20490525]
- **Diseases:** cancer (MESH:D009369), scab disease (MESH:D004194), injury to (MESH:D014947), infectious disease (MESH:D003141), bacterial infection (MESH:D001424), cytotoxic (MESH:D064420)
- **Chemicals:** DTT (MESH:D004229), ON (MESH:D009841), adenine (MESH:D000225), GDP (MESH:D006153), HCl (MESH:D006851), Glu (MESH:D018698), CDP (MESH:D003565), polyT (MESH:D011071), kanamycin (MESH:D007612), cytosine (MESH:D003596), water (MESH:D014867), imidazole (MESH:C029899), Nucleotide (MESH:D009711), polyU (MESH:D011072), uracil (MESH:D014498), TALON (MESH:C013418), EDTA (MESH:D004492), His (MESH:D006639), bromophenol blue (MESH:D001978), -ADP (MESH:D000244), C (MESH:D002244), polyacrylamide (MESH:C016679), metal (MESH:D008670), adenosine (MESH:D000241), T (MESH:D014316), NaCl (MESH:D012965), phosphate (MESH:D010710), uridine (MESH:D014529), oxygen (MESH:D010100), ADP-ribose (MESH:D000246), Lys (MESH:D008239), Cytidine (MESH:D003562), NAD+ (MESH:D009243), diphosphate (MESH:D011756), Guanosine (MESH:D006151), G/C (MESH:C057580), Hydrogen (MESH:D006859), A (MESH:D001151), ribose (MESH:D012266), deoxyuridine (MESH:D003857), Poly (MESH:D011061), ampicillin (MESH:D000667), xylene cyanol (MESH:C048951), IPTG (MESH:D007544), glutamine (MESH:D005973), U (MESH:D014501), aspartate (MESH:D001224), urea (MESH:D014508), Amino acids (MESH:D000596), thymidine (MESH:D013936), riboflavin (MESH:D012256), Ser (MESH:D012694), NADH diphosphate (-), glycerol (MESH:D005990), formamide (MESH:C031066)
- **Species:** Sinorhizobium fredii (species) [taxon 380], Holothuroidea (holothurians, class) [taxon 7705], Meretrix lamarckii (Korean hard clam, species) [taxon 157363], Streptomyces coelicolor (species) [taxon 1902], Amphimedon queenslandica (species) [taxon 400682], Thermus aquaticus (species) [taxon 271], Coccinellidae (lady beetles, family) [taxon 7080], Chondromyces crocatus (species) [taxon 52], Escherichia phage T4 (no rank) [taxon 2681598], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Escherichia coli (E. coli, species) [taxon 562], Porifera (sponges, phylum) [taxon 6040], Streptomyces scabiei (species) [taxon 1930], Solanum tuberosum (potatoes, species) [taxon 4113], Pieris rapae (cabbage white, species) [taxon 64459], Phytophthora nicotianae [taxon 4790], Amoebozoa (amoebozoans, clade) [taxon 554915], Pieris brassicae (cabbage butterfly, species) [taxon 7116], Homo sapiens (human, species) [taxon 9606], Escherichia coli K-12 (strain) [taxon 83333], Escherichia coli BL21(DE3) (strain) [taxon 469008], Lysinibacillus sphaericus (species) [taxon 1421]
- **Mutations:** E88A, S121A, E164Q, E167, E167Q, E164, glutamate is replaced by aspartate, Trp53, glutamate with alanine, Y110F, Gln162, tyrosine to phenylalanine, Gln162 with serine, S121, Trp53 to serine, serine to alanine, A modification of adenosine, Tyr110, thymidine in the TCTC, E167D
- **Cell lines:** SCO5665 — Canis lupus familiaris (Dog), Canine oral melanoma, Cancer cell line (CVCL_0D16), BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), TOP10 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TT29)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12945103/full.md

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945103/full.md

## References

64 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945103/full.md

---
Source: https://tomesphere.com/paper/PMC12945103