# Super-Resolution Imaging of Nuclear Pore Responses to Mechanical Stress and Energy Depletion

**Authors:** Dariana Torres-Rivera, Sobhan Haghparast, Bernd Rieger, Gregory B. Melikyan

PMC · DOI: 10.3390/v18020167 · Viruses · 2026-01-27

## TL;DR

This study uses super-resolution imaging to investigate how nuclear pores respond to stress and energy depletion, finding no significant morphological changes in U2OS cells.

## Contribution

The study provides new empirical evidence that nuclear pores in U2OS cells do not change morphology under ATP depletion or mechanical stress.

## Key findings

- NPCs in U2OS cells did not change radius after ATP depletion using sodium azide or antimycin A.
- Hypotonic or hypertonic stress did not induce detectable expansion or contraction of NPCs.
- The study suggests HIV-1 capsid interactions with nucleoporins may drive pore remodeling during infection.

## Abstract

HIV-1 entry into host cells culminates in integration of the reverse transcribed double-stranded viral DNA into host genes. Several lines of evidence suggest that intact, or nearly intact, HIV-1 cores—large, ~60 nm-wide structures—pass through the nuclear pore complex (NPC), and that this passage is associated with pore remodeling. Cryo-electron tomography studies support the dynamic nature of NPCs and their regulation by cytoskeleton and ATP-dependent processes. To explore NPC remodeling, we used super-resolution Stochastic Optical Reconstruction Microscopy (STORM) of U2OS cells endogenously expressing nucleoporin 96 tagged with SNAP. Single-molecule localization imaging and computational averaging resolved 8-fold symmetric nuclear pores with an average radius of ~51 nm. Depletion of cellular ATP using sodium azide or antimycin A, previously reported to reduce the size of yeast NPCs, did not significantly alter the nuclear pore radius in U2OS cells. Similarly, stressing the nuclear envelope by hypotonic or hypertonic conditions failed to induce detectable expansion or contraction of NPCs. These results indicate that the NPCs in U2OS cells do not respond to ATP depletion nor mechanical stresses on changes in pore morphology that can be resolved by STORM. Since these cells are infectable by HIV-1, we surmise that direct multivalent interactions between HIV-1 capsid and phenylalanine-glycine nucleoporins lining the pore’s interior drive the core penetration into the nucleus and the associated changes in the pore structure.

## Linked entities

- **Chemicals:** sodium azide (PubChem CID 33557), antimycin A (PubChem CID 14957)

## Full-text entities

- **Genes:** GBA3 (glucosylceramidase beta 3 (gene/pseudogene)) [NCBI Gene 57733] {aka CBG, CBGL1, GLUC, KLRP}, NUP107 (nucleoporin 107) [NCBI Gene 57122] {aka GAMOS7, NPHS11, NUP84, ODG6, ODG6; GAMOS7}, LMNA (lamin A/C) [NCBI Gene 4000] {aka CDCD1, CDDC, CMD1A, CMT2B1, EMD2, FPL}, NPC1 (NPC intracellular cholesterol transporter 1) [NCBI Gene 4864] {aka NPC, POGZ, SLC65A1}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, LMNB1 (lamin B1) [NCBI Gene 4001] {aka ADLD, LMN, LMN2, LMNB, MCPH26}, NUP133 (nucleoporin 133) [NCBI Gene 55746] {aka GAMOS8, NPHS18, hNUP133}, NUP98 (nucleoporin 98 and 96 precursor) [NCBI Gene 4928] {aka ADIR2, NUP196, NUP96, Nup98-96}, CAT (catalase) [NCBI Gene 847], PLA2G4A (phospholipase A2 group IVA) [NCBI Gene 5321] {aka GURDP, PLA2G4, cPLA2, cPLA2-alpha}, SLC25A6 (solute carrier family 25 member 6) [NCBI Gene 293] {aka AAC3, ANT, ANT 2, ANT 3, ANT3, ANT3Y}, NUP54 (nucleoporin 54) [NCBI Gene 53371] {aka DYT37}
- **Diseases:** NE (MESH:C564596), injury to (MESH:D014947), STORM (MESH:D009901), SML (MESH:D012640), infection (MESH:D007239)
- **Chemicals:** P (MESH:D010758), MgCl2 (MESH:D015636), NaCl (MESH:D012965), 2-deoxy-D-glucose (MESH:D003847), Streptomycin (MESH:D013307), aphidicolin (MESH:D016590), digitonin (MESH:D004072), Sorbitol (MESH:D013012), Cysteamine Hydrochloride (MESH:D003543), NaN3 (MESH:D019810), Polyvinylpyrrolidone (MESH:D011205), CaCl2 (MESH:D002122), DTT (MESH:D004229), Penicillin (MESH:D010406), AF647 (MESH:C569686), HEPES (MESH:D006531), Cryo-FIB (-), S (MESH:D013455), Phenol Red (MESH:D010637), Nocodazole (MESH:D015739), oil (MESH:D009821), Antimycin A (MESH:D000968), Paraformaldehyde (MESH:C003043), NimOS (MESH:D009553), ATP (MESH:D000255), EGTA (MESH:D004533), CO2 (MESH:D002245), polyethersulfone (MESH:C022840), D-Glucose (MESH:D005947), magnesium (MESH:D008274), calcium (MESH:D002118), KCl (MESH:D011189), PBS (MESH:D007854), PF-3450074 (MESH:C000591221)
- **Species:** Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606], Xenopus laevis (African clawed frog, species) [taxon 8355]
- **Mutations:** phenylalanine-glycine, phenylalanine-glycine
- **Cell lines:** U2OS NUP96 — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_RQ88), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), TZM-bl — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_B478), HEK293T/17 — Homo sapiens (Human), Transformed cell line (CVCL_1926), U2OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042), SNAP — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TP77), NUP96-SNAP — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_B7FL), NL4-3 — Neodiprion lecontei (Redheaded pine sawfly), Spontaneously immortalized cell line (CVCL_Z498), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), pNL4-3 — Anopheles gambiae (African malaria mosquito), Spontaneously immortalized cell line (CVCL_Z622)

## Full text

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## Figures

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## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945098/full.md

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Source: https://tomesphere.com/paper/PMC12945098