# Isolation and Genomic Characterization of Two Lytic Cutibacterium acnes Phages Defines Two Novel Pahexavirus Species

**Authors:** Anastasia A. Vorobeva, Aleksei M. Vorobev, Peter V. Evseev, Emil R. Mekhtiev, Andrei V. Chaplin, Maria A. Pasivkina, Ekaterina S. Zubkova, Svetlana S. Bochkareva, Mikhail A. Yaitsky, Nikolai A. Nikitin, Natalia B. Demina, Victoria A. Korol, Andrei V. Aleshkin, Anatolij N. Blintsov, Maria N. Anurova

PMC · DOI: 10.3390/v18020214 · Viruses · 2026-02-06

## TL;DR

Scientists isolated two new bacteriophages that can kill acne-causing bacteria and could be used as an alternative to antibiotics.

## Contribution

The study introduces two novel lytic phages from acne lesions, expanding the Pahexavirus genus and offering potential phage therapy candidates.

## Key findings

- Two lytic Cutibacterium acnes phages (NS-ph1 and NS-ph2) were isolated and shown to have a broad lytic spectrum against multiple C. acnes strains.
- Genomic analysis revealed linear dsDNA genomes with no genes for lysogeny, toxins, or antibiotic resistance.
- Both phages retained infectivity for three months at room temperature and belong to the Pahexavirus genus.

## Abstract

Bacteriophages are promising antibacterial agents for managing acne vulgaris caused by Cutibacterium acnes, particularly given increasing antibiotic resistance. Here, we isolated and characterized two lytic Cutibacterium phages, NS-ph1 and NS-ph2, from acne lesions. Both bacteriophages exhibited a broad lytic spectrum, with a high activity against 27 C. acnes strains. Adsorption assays indicated rapid attachment and one-step growth experiments revealed latent periods of 4 h (NS-ph1) and 2 h (NS-ph2) and burst sizes of 70 and 59 PFU per infected cell, respectively. After long-term storage at room temperature, both phages retained infectivity for 3 months. Genome sequencing revealed linear dsDNA genomes of 29,490 bp (NS-ph1) and 29,189 bp (NS-ph2) with 51 and 46 predicted ORFs, respectively, and no tRNAs. No genes associated with lysogeny, toxins, or antibiotic resistance were detected. Comparative genomics placed both phages within the genus Pahexavirus. Together, these data expand the diversity of Pahexavirus and provide two well-characterized lytic candidates for further evaluation in anti-acne phage therapy.

## Linked entities

- **Diseases:** acne vulgaris (MONDO:0011438)
- **Species:** Cutibacterium acnes (taxon 1747), Pahexavirus (taxon 1982251)

## Full-text entities

- **Genes:** holin [NCBI Gene 6446519], INHCAP (inhibitor of carbonic anhydrase pseudogene) [NCBI Gene 100129696] {aka TFP, TFP1}, RBP4 (retinol binding protein 4) [NCBI Gene 5950] {aka MCOPCB10, RDCCAS}
- **Diseases:** skin disorder (MESH:D012871), hypomelanosis (MESH:D017496), prostate cancer (MESH:D011471), injury to (MESH:D014947), skin abscesses (MESH:D000038), inflammation (MESH:D007249), thyroid cancer (MESH:D013964), endophthalmitis (MESH:D009877), toxicity (MESH:D064420), infection (MESH:D007239), endocarditis (MESH:D004696), bacterial overgrowth (MESH:D001765), Acne (MESH:D000152), postoperative central nervous system infections (MESH:D002494)
- **Chemicals:** azithromycin (MESH:D017963), clarithromycin (MESH:D017291), doxycycline (MESH:D004318), L-alanine (MESH:D000409), ciprofloxacin (MESH:D002939), Agar (MESH:D000362), N2 (MESH:D009584), levofloxacin (MESH:D064704), free fatty acids (MESH:D005230), SM (MESH:D012493), clindamycin (MESH:D002981), N-acetylmuramic acid (MESH:C031651), erythromycin (MESH:D004917), gentamicin (MESH:D005839), charcoal (MESH:D002606), tetracycline (MESH:D013752), glycerol (MESH:D005990), EOP (-), trimethoprim/sulfamethoxazole (MESH:D015662), chloroform (MESH:D002725), minocycline (MESH:D008911), CO2 (MESH:D002245), citrate (MESH:D019343), ampicillin (MESH:D000667), ice (MESH:D007053)
- **Species:** Mycobacterium phage U2 (no rank) [taxon 260120], Cutibacterium acnes (species) [taxon 1747], Lactococcus virus P2 (species) [taxon 254252], Pahexavirus (genus) [taxon 1982251], Propionibacterium phage Doucette (no rank) [taxon 1897534], Gordonia phage Phistory (no rank) [taxon 2301694], Rhodococcus phage RRH1 (no rank) [taxon 1109717], Streptococcus (genus) [taxon 1301], Lactococcus phage proPhi7 (species) [taxon 2656514], Propionibacterium phage PA6 (no rank) [taxon 376758], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Cutibacterium (genus) [taxon 1912216], Salasvirus phi29 (species) [taxon 10756], Cutibacterium avidum (species) [taxon 33010], Cutibacterium granulosum (species) [taxon 33011], Bacteriophage sp. (species) [taxon 38018]
- **Cell lines:** ATCC6919 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945031/full.md

## References

80 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945031/full.md

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Source: https://tomesphere.com/paper/PMC12945031