# Functional Analyses of the Histone-like A104R Protein of African Swine Fever Virus and of a Homologous Pseudogene Product Found in Soft Tick Genomes

**Authors:** Björn-Patrick Mohl, Tonny Kabuuka, Katarzyna Magdalena Dolata, Katrin Pannhorst, Jan Hendrik Forth, Axel Karger, Thomas C. Mettenleiter, Walter Fuchs

PMC · DOI: 10.3390/v18020272 · Viruses · 2026-02-23

## TL;DR

This study investigates the role of the A104R protein in African swine fever virus and its homolog in ticks, finding it not essential for replication but affecting virus growth.

## Contribution

The study reveals the functional role of A104R and its tick homolog in ASFV replication and protein interactions.

## Key findings

- A104R is not essential for in vitro replication of ASFV.
- Loss of A104R leads to reduced virus titers and plaque sizes.
- pA104R interacts with viral and cellular proteins independently of DNA.

## Abstract

African swine fever virus (ASFV) causes a fatal disease in domestic pigs and wild boars (Sus scrofa), leading to nearly 100% mortality during acute infection and significant economic losses in swine production. Unlike other eukaryotic viruses, ASFV encodes a histone-like nucleic acid-binding protein, pA104R, which is highly conserved and present in all described ASFV isolates of different genotypes. Moreover, A104R-like sequences have been identified in the genomes of soft ticks, which can replicate and transmit ASFV. Using a virulent genotype IX field isolate from Kenya, we analyzed the importance of A104R for viral replication in a permissive wild boar cell line (WSL). In this study, we confirmed that A104R is not essential for in vitro replication of ASFV. Loss of A104R did not detectably affect viral DNA replication or RNA transcription but led to a moderate reduction in virus titers and plaque sizes. Substitution of A104R with a similar ASFV-like element derived from the genome of an Ornithodoros moubata soft tick was not capable of rescuing the deletion mutant phenotype. In contrast, reintroduction of the authentic A104R open reading frame (ORF) into the deletion mutant fully restored wild-type virus growth properties. In accompanying studies, we verified the DNA-binding activities of the ASFV- and tick-derived A104R proteins and performed mass spectrometric analyses of the pA104R interactome. These experiments revealed, besides DNA-dependent co-precipitated proteins, specific DNA-independent protein–protein interactions of pA104R with other viral and cellular proteins.

## Linked entities

- **Genes:** A104R (DNA binding protein) [NCBI Gene 22220416]
- **Diseases:** African swine fever (MONDO:0025377)
- **Species:** Sus scrofa (taxon 9823), Ornithodoros moubata (taxon 6938)

## Full-text entities

- **Genes:** NANS (N-acetylneuraminate synthase) [NCBI Gene 54187] {aka HEL-S-100, SAS, SEMDCG, SEMDG}, E120R (structural protein p14.5) [NCBI Gene 22220361], DDX17 (DEAD-box helicase 17) [NCBI Gene 10521] {aka P72, RH70}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, H1-3 (H1.3 linker histone, cluster member) [NCBI Gene 3007] {aka H1.3, H1D, H1F3, H1s-2, HIST1H1D}, ANP32E (acidic nuclear phosphoprotein 32 family member E) [NCBI Gene 81611] {aka LANP-L, LANPL}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, B646L (structural protein p72) [NCBI Gene 22220311], H1-0 (H1.0 linker histone) [NCBI Gene 3005] {aka H1.0, H10, H1F0, H1FV}, CP204L (ASFV-induced protein p32) [NCBI Gene 22220322], pI215 [NCBI Gene 41902234], TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, TOP2A (DNA topoisomerase II alpha) [NCBI Gene 7153] {aka TOP2, TOP2alpha, TOPIIA, TP2A}, A104R (DNA binding protein) [NCBI Gene 22220416], pA137 [NCBI Gene 41902092], H2AZ2 (H2A.Z variant histone 2) [NCBI Gene 94239] {aka H2A.Z-2, H2AFV, H2AV}, CENPV (centromere protein V) [NCBI Gene 201161] {aka 3110013H01Rik, CENP-V, PRR6, p30}, H1-4 (H1.4 linker histone, cluster member) [NCBI Gene 3008] {aka H1.4, H1E, H1F4, H1s-4, HIST1H1E, RMNS}, pA104 [NCBI Gene 41902081], POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ANP32D (acidic nuclear phosphoprotein 32 family member D) [NCBI Gene 23519] {aka PP32R2}, pB602L [NCBI Gene 22220309], RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, pK78R [NCBI Gene 41902100], NP419L (DNA ligase) [NCBI Gene 22220329]
- **Diseases:** infection (MESH:D007239), viral disease (MESH:D014777), CPE (MESH:D065606), ASF (MESH:D000357), injury to (MESH:D014947)
- **Chemicals:** TBS-T (MESH:C027647), CP-P (MESH:C014896), sucrose (MESH:D013395), lipid (MESH:D008055), cysteine (MESH:D003545), TEG (MESH:C000619859), agarose (MESH:D012685), acetone (MESH:D000096), AlexaFluor 488 (MESH:C000711379), urea (MESH:D014508), penicillin (MESH:D010406), E8263 (-), oligonucleotides (MESH:D009841), SDS (MESH:D012967), HCl (MESH:D006851), TRIzol (MESH:C411644), H2O (MESH:D014867), methyl cellulose (MESH:D008747), acetonitrile (MESH:C032159), stilbene (MESH:D013267), streptomycin (MESH:D013307), polyacrylamide (MESH:C016679), N-dodecyl beta-D-maltoside (MESH:C040358), Nonidet P40 (MESH:C010615), EDTA (MESH:D004492), formic acid (MESH:C030544), methionine (MESH:D008715), MgCl2 (MESH:D015636), TE (MESH:D013691), methanol (MESH:D000432), NaCl (MESH:D012965)
- **Species:** Potamochoerus larvatus (bushpig, species) [taxon 273792], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Ixodida (ticks, order) [taxon 6935], Ornithodoros moubata (species) [taxon 6938], Homo sapiens (human, species) [taxon 9606], Suidae (boars, family) [taxon 9821], Sus scrofa (pig, species) [taxon 9823], African swine fever virus (no rank) [taxon 10497], Phacochoerus africanus (Common warthog, species) [taxon 41426], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** K145R, A224L, P1192R, I177L, A240L, I215L, A104R, A137R, A104R
- **Cell lines:** Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), RK13 — Oryctolagus cuniculus (Rabbit), Spontaneously immortalized cell line (CVCL_3155), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), AK1033 — Homo sapiens (Human), Astrocytoma, Cancer cell line (CVCL_1093), WSL — Sus scrofa (Pig), Spontaneously immortalized cell line (CVCL_0I66), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12945001/full.md

## References

77 references — full list in the complete paper: https://tomesphere.com/paper/PMC12945001/full.md

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Source: https://tomesphere.com/paper/PMC12945001