# Combining Network Pharmacology and Experimental Verification to Investigate the Protective Effect of Melatonin on Fluoride-Induced Brain Injury

**Authors:** Runjiang Ma, Chun Wang, Wenqi Qin, Yajie Li, Meng Zhang, Yongkang Liang, Lu Wang, Suya Wang, Gaoxuan Xie, Qiang Niu

PMC · DOI: 10.3390/toxics14020128 · Toxics · 2026-01-29

## TL;DR

This study shows that melatonin protects against brain damage caused by fluoride exposure by improving mitochondrial function and regulating key signaling pathways.

## Contribution

The study combines network pharmacology and experimental validation to reveal melatonin's protective mechanism against fluoride-induced neurotoxicity.

## Key findings

- Melatonin improved cognitive impairments and structural hippocampal damage in rats and cells exposed to fluoride.
- Melatonin upregulated SIRT3 and downregulated HIF-1α, restoring mitochondrial function and ATP levels.
- The protective effect of melatonin is linked to the SIRT3/HIF-1α signaling pathway.

## Abstract

Excessive fluoride exposure induces developmental neurotoxicity, but effective preventive strategies are currently scarce. Melatonin (Mel), a lipophilic hormone secreted by the pineal gland, exerts antioxidant, anti-inflammatory, and neuroprotective properties. This study aimed to explore Mel’s protective effect and mechanism against fluoride-induced developmental brain injury. We employed a network pharmacology approach to screen the common targets of Mel and fluoride-induced brain injury and performed enrichment analysis. A total of 189 common targets were identified, and these targets were mainly enriched in the HIF-1 signaling pathway and oxidative stress-related pathways. In vivo, Sprague Dawley rats were subjected to perinatal sodium fluoride (NaF) exposure with/without Mel; in vitro, HT22 cells were subjected to NaF and/or Mel. The results showed that Mel improved cognitive impairments and alleviated structural damage to hippocampal neurons and mitochondria. Furthermore, Mel upregulated SIRT3 and downregulated HIF-1α, thereby restoring mitochondrial oxidative phosphorylation and ATP content. This study demonstrates that Mel alleviates fluoride-induced developmental neurotoxicity by improving mitochondrial function through regulating the SIRT3/HIF-1α signaling pathway. This not only offers a novel perspective for elucidating the underlying molecular mechanisms of fluoride-induced developmental neurotoxicity but also provides a theoretical foundation for Mel as a potential protective candidate against fluoride exposure.

## Linked entities

- **Genes:** SIRT3 (sirtuin 3) [NCBI Gene 23410], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091]
- **Chemicals:** melatonin (PubChem CID 896), sodium fluoride (PubChem CID 5235), NaF (PubChem CID 5235)

## Full-text entities

- **Genes:** Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) [NCBI Gene 227197] {aka 5830412M15Rik, 9930026A05Rik}, Sirt3 (sirtuin 3) [NCBI Gene 64384] {aka 2310003L23Rik, Sir2l3}, Akt1 (AKT serine/threonine kinase 1) [NCBI Gene 24185] {aka Akt}, Hif1a (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 29560] {aka HIF1-alpha, MOP1}, Hif1a (hypoxia inducible factor 1, alpha subunit) [NCBI Gene 15251] {aka HIF-1-alpha, HIF1-alpha, HIF1alpha, MOP1, bHLHe78}, Actb (actin, beta) [NCBI Gene 81822] {aka Actx}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56718] {aka Frap1, RAFT1}, Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) [NCBI Gene 301458], Agxt (alanine--glyoxylate aminotransferase) [NCBI Gene 24792] {aka AGT, SPT, Spat}, Pik3cb (phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta) [NCBI Gene 85243], Sod2 (superoxide dismutase 2) [NCBI Gene 24787] {aka MnSOD}, Sirt3 (sirtuin 3) [NCBI Gene 293615], Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 24383] {aka BARS-38, Gapd}, Cat (catalase) [NCBI Gene 24248] {aka CS1, Cas1, Cat01, Catl, Cs-1}
- **Diseases:** MMP (MESH:D015433), Neuronal Damage (MESH:D009410), Cognitive Impairments (MESH:D003072), Brain Injury (MESH:D001930), developmental brain injury (MESH:D001927), nerve injury (MESH:D000080902), Brain Damage (MESH:D001925), dental caries (MESH:D003731), hippocampal damage (MESH:D000092223), cognitive behavioral abnormalities (OMIM:614756), toxicity (MESH:D064420), MF (MESH:C567116), neuronal energy deficiency (MESH:D011502), Impaired energy metabolism (MESH:D008659), Mitochondrial Impairment (MESH:D028361), Parkinson's disease (MESH:D010300), inflammatory (MESH:D007249), injury to (MESH:D014947), neurodegenerative diseases (MESH:D019636), developmental neurotoxicity (MESH:D020258), Alzheimer's disease (MESH:D000544)
- **Chemicals:** lipids (MESH:D008055), antimycin A (MESH:D000968), ATP (MESH:D000255), CO2 (MESH:D002245), Rotenone (MESH:D012402), DMSO (MESH:D004121), ROS (MESH:D017382), Oligomycin (MESH:D009840), Tween 20 (MESH:D011136), PBS (MESH:D007854), NAD+ (MESH:D009243), PVDF (MESH:C024865), proton (MESH:D011522), JC-1 (MESH:C068624), CCCP (MESH:C070053), penicillin (MESH:D010406), 5,5',6,6'-tetrachloro-1,1',3,3'-tetraethylbenzimidazolylcarbocyanine (-), Mel (MESH:D008550), polybrominated diphenyl ethers (MESH:D055768), uranyl acetate (MESH:C005460), hydrofluoric acid (MESH:D006858), acetone (MESH:D000096), epoxy (MESH:D004853), DCFH-DA (MESH:C029569), Fluoride (MESH:D005459), NaF (MESH:D012969), water (MESH:D014867), CCK-8 (MESH:D012844), Fluorine (MESH:D005461), toluidine blue (MESH:D014048), ethanol (MESH:D000431), FCCP (MESH:D002259), SDS (MESH:D012967), oxygen (MESH:D010100), paraffin (MESH:D010232), streptomycin (MESH:D013307), tricarboxylic acid (MESH:D014233), nickel (MESH:D009532), xylene (MESH:D014992), nitrogen (MESH:D009584), carbonyl cyanide m-chlorophenylhydrazone (MESH:D002258), EDTA (MESH:D004492)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Cell lines:** HT22 — Mus musculus (Mouse), Transformed cell line (CVCL_0321)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12944959/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12944959/full.md

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Source: https://tomesphere.com/paper/PMC12944959