# Effects of tacrolimus treatment on the gut microbiota and metabolites in liver transplant recipients

**Authors:** Guohui Wang, Lu Liu, Hanshu Zhang, Panpan Mao, Saijuan Lu, Xiaofang Zhang, Xingde Li, Cangsang Song

PMC · DOI: 10.1371/journal.pone.0343817 · PLOS One · 2026-02-26

## TL;DR

This study shows how tacrolimus treatment affects gut bacteria and their metabolites in liver transplant patients, which could help improve treatment strategies.

## Contribution

The study reveals specific changes in gut microbiota diversity and metabolite profiles linked to tacrolimus treatment parameters in liver transplant recipients.

## Key findings

- Longer tacrolimus use increases gut microbiota diversity and alters bacterial and viral abundances.
- Higher tacrolimus concentrations are associated with increased diversity up to a threshold, beyond which diversity declines.
- Changes in tacrolimus C/D ratios correlate with significant increases or decreases in specific gut metabolites.

## Abstract

Liver transplantation (LT) is an effective treatment for patients with end-stage liver disease. In recent years, more and more evidence has supported the association between gut microbiota dysbiosis and the pathogenesis and progression of liver diseases.

The study included 36 patients who received tacrolimus treatment after liver transplantation. Patients were stratified into subgroups according to three key variables: tacrolimus treatment duration, whole-blood tacrolimus concentration, and tacrolimus concentration-to-dose (C/D) ratio. Fecal samples and whole-blood specimens were collected from all participants. The Illumina HiSeq X platform was used to detect the gut metagenome, analyzing the composition and characteristics of the gut microbiota. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) technology was employed to detect metabolites of the gut microbiota, revealing their metabolic profiles.

As the duration of tacrolimus use increased, the diversity of the gut microbiota also increased, and the abundance of Escherichia coli_D and Bacteroides stercoris rose. Additionally, the abundance of Brunovirus and Uetakevirus tended to decrease. The abundance of gene functions related to chemical carcinogenesis and bacterial invasion of epithelial cells significantly decreased. In the gut microbiota metabolites, 16 substances like Astragaloside A and Acetyl-L-carnitine significantly increased, while 108 substances like Capsaicin and TLK significantly decreased. Within a certain range, as the concentration of tacrolimus in whole blood increased, the diversity of the gut microbiota increased. The abundance of Phocaeicola and Klebsiella increased, and the abundance of Peduovirus among viruses also rose. However, excessively high concentrations may lead to a decrease in the diversity of the gut microbiota and a decrease in the abundance of Phocaeicola. With respect to the C/D ratio, increased ratios were linked to significantly higher levels of 57 fecal metabolites (e.g., PC 34:2, 5-Methyl-2’-deoxycytidine), whereas 13 metabolites (e.g., FAHFA 2:0/16:0) showed substantial declines.

Tacrolimus treatment is associated with distinct alterations in gut microbiota and metabolites among LT recipients. These findings provide a preliminary framework for future investigations aimed at optimizing immunosuppressive regimens, although their clinical translational potential requires validation in larger-scale, prospective cohort studies.

## Linked entities

- **Chemicals:** tacrolimus (PubChem CID 445643), Astragaloside A (PubChem CID 13943299), Acetyl-L-carnitine (PubChem CID 7045767), Capsaicin (PubChem CID 1548943), PC 34:2 (PubChem CID 5287971), 5-Methyl-2’-deoxycytidine (PubChem CID 1835), FAHFA 2:0/16:0 (PubChem CID 86028212)
- **Diseases:** liver disease (MONDO:0005154), end-stage liver disease (MONDO:0100193)
- **Species:** Bacteroides stercoris (taxon 46506), Brunovirus (taxon 2560108), Uetakevirus (taxon 542960), Phocaeicola (taxon 909656), Klebsiella (taxon 570), Peduovirus (taxon 140410)

## Full-text entities

- **Genes:** AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, PTH (parathyroid hormone) [NCBI Gene 5741] {aka FIH1, PTH1}
- **Diseases:** infection (MESH:D007239), gastrointestinal diseases (MESH:D005767), colitis (MESH:D003092), toxicity (MESH:D064420), end-stage liver disease (MESH:D058625), colorectal cancer (MESH:D015179), HCC (MESH:D006528), sepsis (MESH:D018805), infectious infectious complications (MESH:D003141), enteric disease (MESH:D004751), alcohol-related liver disease (MESH:D008108), bacterial (MESH:D001424), inflammatory bowel disease (MESH:D015212), Gram-negative bacterial infections (MESH:D016905), intestinal obstruction (MESH:D007415), liver failure (MESH:D017093), hepatic encephalopathy (MESH:D006501), Mental disorders (MESH:D001523), neurotoxicity (MESH:D020258), diabetic (MESH:D003920), gut dysbiosis (MESH:D064806), opportunistic infections (MESH:D009894), cancer (MESH:D009369), trauma (MESH:D014947), liver diseases (MESH:D008107), inflammation (MESH:D007249), SLE (MESH:D008180), hemolysis (MESH:D006461), diarrhea (MESH:D003967), pneumonia (MESH:D011014), carcinogenesis (MESH:D063646)
- **Chemicals:** butyrate (MESH:D002087), 5-Methyl-2'-deoxycytidine (MESH:C016569), ethyl oleate (MESH:C033180), PC (MESH:C053518), MC (MESH:C061001), EDTA-K2 (-), cafestol (MESH:C053400), bile acids (MESH:D001647), TAC (MESH:D016559), L-Tryptophan (MESH:D014364), spermidine (MESH:D013095), Acetyl-L-carnitine (MESH:D000108), short-chain fatty acid (MESH:D005232), calcium (MESH:D002118), polyamine (MESH:D011073), Capsaicin (MESH:D002211), LPS (MESH:D008070), Lipids (MESH:D008055), Astragaloside A (MESH:C052064), EDTA (MESH:D004492), nitrogen (MESH:D009584), MMF (MESH:D009173), methanol (MESH:D000432), 11-keto Testosterone (MESH:C003600), ammonia (MESH:D000641), M1 (MESH:C400939), water (MESH:D014867)
- **Species:** Bacteroides fragilis (species) [taxon 817], Alistipes (genus) [taxon 239759], Rattus norvegicus (brown rat, species) [taxon 10116], Enterorhabdus (genus) [taxon 580024], Staphylococcus aureus (species) [taxon 1280], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Clostridium (genus) [taxon 1485], Alloprevotella (genus) [taxon 1283313], Bifidobacterium (genus) [taxon 1678], Faecalibacterium prausnitzii (species) [taxon 853], Homo sapiens (human, species) [taxon 9606], Bacteroides stercoris (species) [taxon 46506], Bacteroides xylanisolvens (species) [taxon 371601], Lederbergvirus (genus) [taxon 186794], Svunavirus (genus) [taxon 2169625], Bacteriophage sp. (species) [taxon 38018], Peduovirus (genus) [taxon 140410], gut metagenome (species) [taxon 749906], Parabacteroides (genus) [taxon 375288], Rauchvirus (genus) [taxon 542959], Enterobacteriaceae (enterobacteria, family) [taxon 543], Klebsiella sp. A (species) [taxon 1928193], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Prevotella (genus) [taxon 838], Brunovirus (genus) [taxon 2560108], Mus musculus (house mouse, species) [taxon 10090], Lactobacillus (genus) [taxon 1578], Phocaeicola (genus) [taxon 909656], Escherichia coli (E. coli, species) [taxon 562], Klebsiella michiganensis (species) [taxon 1134687], Bcepmuvirus (genus) [taxon 1198139], Allobaculum (genus) [taxon 174708], Roseburia (genus) [taxon 841], Bacteroides uniformis (species) [taxon 820], Enterobacter (genus) [taxon 547], Klebsiella (genus) [taxon 570], Bacteroides ovatus (species) [taxon 28116], Drulisvirus (genus) [taxon 1920774], Clostridia (class) [taxon 186801], Bacteroides thetaiotaomicron (species) [taxon 818], Uetakevirus (genus) [taxon 542960], Lubbockvirus (genus) [taxon 1912144]

## Full text

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## Figures

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## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC12944773/full.md

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Source: https://tomesphere.com/paper/PMC12944773