# Rational Design, Synthesis, and Molecular Docking of Novel Terpene Analogues of Imatinib, and Their Inhibition on Downstream BCR-ABL Signaling

**Authors:** Rositsa Mihaylova, Asine Dailova-Barzeva, Irena Philipova, Georgi Momekov, Irini Doytchinova, Mariyana Atanasova, Georgi Stavrakov

PMC · DOI: 10.3390/ph19020198 · 2026-01-23

## TL;DR

Researchers designed new imatinib versions with terpene modifications that better inhibit cancer-related signaling in leukemia cells.

## Contribution

Novel imatinib analogues with terpene moieties were synthesized and shown to modulate specific downstream BCR-ABL signaling pathways.

## Key findings

- Imatinib analogues with terpene modifications showed enhanced antiproliferative activity in BCR-ABL+ leukemia cells.
- Compound 6a reduced CREB activation, while 6d suppressed the PI3K/Akt pathway and activated p53-mediated stress responses.
- Molecular docking confirmed conserved ATP-binding site interactions with subtle electrostatic and steric changes.

## Abstract

Background/Objectives: Imatinib, the first tyrosine kinase inhibitor, marks the beginning of a revolution in clinical oncology. Disrupting oncogenic kinase-dependent signaling pathways represents a key strategy for advancing targeted cancer therapies. Terpene analogues of imatinib were developed to probe the influence of terminal ring modifications on BCR-ABL inhibition and downstream oncogenic signaling. Methods: Nine novel imatinib analogues bearing bulky aliphatic moieties were designed, synthesised, and structurally characterized by 1H/13C NMR spectroscopy and high-resolution mass spectrometry (HRMS). Molecular docking calculations were performed to assess the binding modes and intermolecular interactions. The cytotoxicity of the newly synthesized imatinib derivatives was evaluated across a panel of BCR-ABL+ leukemia cell lines. Results: Molecular docking analyses demonstrated conserved interactions within the ATP-binding site of BCR-ABL for all derivatives, with calculated docking scores ranging between 123 and 128, while modifications at the terminal ring introduced subtle changes in electrostatic and steric profiles. Biological evaluation using MTT-based cytotoxicity assays in BCR-ABL+ leukemic cell lines revealed enhanced antiproliferative activity compared with imatinib, with compounds 6a (flexible cyclohexyl) and 6d (rigid camphane-type (+)-isopinocampheyl) exhibiting the lowest micromolar activity in the AR-230 model (IC50 values of 1.1 and 1.2 μM, respectively). Proteome-wide phosphokinase profiling demonstrated shared suppression of STAT5/3/6, RSK1/2, S6K1/p70, and Pyk2, confirming effective disruption of canonical BCR-ABL pathways. Critically, the terpene moiety dictated downstream pathway bias: 6a preferentially attenuated CREB activation, whereas 6d more effectively suppressed the PI3K/Akt oncogenic axis and strongly activated proapoptotic p53-mediated stress responses. Conclusions: Our findings establish terpene-engineered imatinib analogues as tunable modulators and promising candidates for targeting downstream BCR-ABL signaling pathways in leukemia treatment.

## Linked entities

- **Genes:** ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25], STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776], STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774], STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778], RPS6KA1 (ribosomal protein S6 kinase A1) [NCBI Gene 6195], RPS6KA3 (ribosomal protein S6 kinase A3) [NCBI Gene 6197], RPS6KB1 (ribosomal protein S6 kinase B1) [NCBI Gene 6198], ANXA6 (annexin A6) [NCBI Gene 309], PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185], CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], TP53 (tumor protein p53) [NCBI Gene 7157]
- **Chemicals:** imatinib (PubChem CID 5291)
- **Diseases:** leukemia (MONDO:0004355)

## Full-text entities

- **Genes:** PGP (phosphoglycolate phosphatase) [NCBI Gene 283871] {aka AUM, G3PP, PGPase}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CHEK2 (checkpoint kinase 2) [NCBI Gene 11200] {aka CDS1, CHK2, HuCds1, LFS2, PP1425, RAD53}, BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613] {aka ALL, BCR1, CML, D22S11, D22S662, PHL}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, GLI1 (GLI family zinc finger 1) [NCBI Gene 2735] {aka GLI, PAPA8, PPD1}, CCL1 (C-C motif chemokine ligand 1) [NCBI Gene 6346] {aka I-309, P500, SCYA1, SISe, TCA3}, PAH (phenylalanine hydroxylase) [NCBI Gene 5053] {aka PH, PKU, PKU1}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, UBASH3B (ubiquitin associated and SH3 domain containing B) [NCBI Gene 84959] {aka STS-1, STS1, TULA-2, TULA2, p70}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, CCNL2 (cyclin L2) [NCBI Gene 81669] {aka ANIA-6B, CCNM, CCNS, HCLA-ISO, HLA-ISO, PCEE}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RPS6KB1 (ribosomal protein S6 kinase B1) [NCBI Gene 6198] {aka PS6K, S6K, S6K-beta-1, S6K1, STK14A, p70 S6KA}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}
- **Diseases:** hematological malignancies (MESH:D019337), neuroblastoma (MESH:D009447), oncogenic (MESH:D000074723), Cancer (MESH:D009369), crisis (MESH:D001752), lung cancer (MESH:D008175), adult leukemias (MESH:D015459), esophageal squamous cell carcinoma (MESH:D000077277), CML (MESH:D015464), melanoma (MESH:D008545), glioma (MESH:D005910), injury to (MESH:D014947), inflammatory (MESH:D007249), cervical carcinoma (MESH:D002583), hepatocellular carcinoma (MESH:D006528), Ph (MESH:D010677), ovarian and lung cancer (MESH:D010051), leukemic transformation (MESH:D002472), ALL (MESH:D054198), B-cell ALL (MESH:D015456), Cytotoxicity (MESH:D064420), metastasis (MESH:D009362), leukemia (MESH:D007938), deaths (MESH:D003643)
- **Chemicals:** SDS (MESH:D012967), isopropanol (MESH:D019840), HCl (MESH:D006851), 13C (MESH:C000615229), NaOH (MESH:D012972), HATU (MESH:C472082), BS (MESH:D001895), pyrimidine (MESH:C030986), Borneol (MESH:C022871), amide (MESH:D000577), water (MESH:D014867), essential oils (MESH:D009822), Terpene (MESH:D013729), Imatinib (MESH:D000068877), paclitaxel (MESH:D017239), carboxylic acid (MESH:D002264), N (MESH:D009584), sulfonamides (MESH:D013449), CH2Cl2 (MESH:D008752), CO (MESH:D002248), streptomycin (MESH:D013307), C (MESH:D002244), CH3CN (MESH:C032159), ester (MESH:D004952), MeI (MESH:C035713), methanol (MESH:D000432), 3H (MESH:D014316), camphene (MESH:C019286), Silica Gel (MESH:D058428), oxygen (MESH:D010100), 1-adamantylamine (MESH:D000547), formazan (MESH:D005562), acid (MESH:D000143), phosphate (MESH:D010710), cyclohexylamine (MESH:D003514), PLP (MESH:D011732), hydrogen (MESH:D006859), PBS (MESH:D007854), benzamide (MESH:C037689), magnesium (MESH:D008274), DMSO (MESH:D004121), CO2 (MESH:D002245), ATP (MESH:D000255), OH (MESH:C031356), piperazine (MESH:D000077489), dichloroethane (MESH:D005025), DIPEA (MESH:C027070), CHCl3 (MESH:D002725), Cy (MESH:D003545), MTT (MESH:C070243), camphane (MESH:C067796), temozolomide (MESH:D000077204), MgSO4 (MESH:D008278), nilotinib (MESH:C498826), dasatinib (MESH:D000069439), monoterpene (MESH:D039821), hydrocarbon (MESH:D006838), NH2 (MESH:D000588), 2H (MESH:D003903), Celite (MESH:D007692)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** serine/threonine, no, T315I
- **Cell lines:** K-562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), K — Clarias batrachus (Walking catfish), Spontaneously immortalized cell line (CVCL_S935), Ph — Homo sapiens (Human), Childhood B acute lymphoblastic leukemia, Cancer cell line (CVCL_ZV70), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), 84 — Homo sapiens (Human), Oligodendroglioma, Cancer cell line (CVCL_C6J0), BV-173 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0181), 562 — Homo sapiens (Human), Finite cell line (CVCL_X233), LAMA-84 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0388), LAMA — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_1826), AR-230 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_9478)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12944436/full.md

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Source: https://tomesphere.com/paper/PMC12944436