# Mechanistic Investigation of Astragalus Root in the Management of T2DM-NAFLD Comorbidity: An Integrated Network Pharmacology, Molecular Docking, Molecular Dynamics Simulation, and In Vitro Study

**Authors:** Jie Li, Nanqi Shao, Ying Gao, Baojian Li, Yan Liang, Yinglai Yang, Jianguang Li

PMC · DOI: 10.3390/ph19020289 · 2026-02-09

## TL;DR

This study explores how Astragalus root helps manage type 2 diabetes and fatty liver disease by identifying key molecular targets and mechanisms.

## Contribution

The study integrates network pharmacology, molecular docking, and in vitro experiments to reveal the mechanisms of Astragalus root in T2DM-NAFLD comorbidity.

## Key findings

- Formononetin from Astragalus root binds to key targets like IL-6 and AKT1, stabilizing interactions through molecular dynamics.
- In vitro tests show formononetin reduces lipid accumulation and inflammation by inhibiting the PI3K/AKT/mTOR pathway.
- The compound lowers oxidative stress markers and enhances antioxidant activity in liver cells.

## Abstract

Background/Objectives: Astragalus root is a classical qi-tonifying traditional Chinese medicine that has demonstrated potential therapeutic efficacy in type 2 diabetes mellitus (T2DM) and non-alcoholic fatty liver disease (NAFLD). However, the precise mechanisms underlying its effects on the comorbidity of these two disorders remain unclear. This study investigated the molecular mechanisms by which Astragalus root ameliorated T2DM-NAFLD comorbidity. Methods: Network pharmacology, molecular docking, molecular dynamics simulation, and in vitro experiments were employed to elucidate the potential roles and mechanisms of Astragalus root in the management of T2DM-NAFLD comorbidity. Results: A total of 25 bioactive constituents and 152 corresponding targets associated with Astragalus root were identified. PPI network analysis revealed the top ten core candidate targets, among which six possessed suitable crystal structures for molecular docking, including interleukin-6 (IL-6), threonine-protein kinase 1(AKT1), transcription factor AP-1(JUN), tumor necrosis factor (TNF), cysteine-dependent aspartate-specific protease 3 (CASP3), and estrogen Receptor 1(ESR1). Kyoto encyclopedia of genes and genomes (KEGG) analysis further identified the phosphatidylinositol 3-kinase (PI3K)-AKT as the most significantly enriched pathway. Molecular docking validated the potential binding modes of formononetin to the six core targets, a finding that was further confirmed by molecular dynamics simulations, which proved the stability of the resulting complexes. In vitro experiments demonstrated that formononetin obviously decreased lipid droplet accumulation, downregulated total cholesterol (TC) and triglyceride (TG) levels, suppressed the expression of TNF-α, IL-6, and interleukin-1β (IL-1β), decreased reactive oxygen species (ROS) and malondialdehyde (MDA) levels, and enhanced glutathione (GSH) content and superoxide dismutase (SOD) activity. These therapeutic effects were achieved through inhibition of protein expression within the PI3K/AKT/mechanistic target of rapamycin (mTOR) signaling pathway. Conclusions: This study determined the potential therapeutic targets and underlying mechanisms of formononetin derived from Astragalus root in the T2DM-NAFLD management, thereby providing a scientific basis for its clinical application.

## Linked entities

- **Genes:** IL6 (interleukin 6) [NCBI Gene 3569], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725], TNF (tumor necrosis factor) [NCBI Gene 7124], CASP3 (caspase 3) [NCBI Gene 836], ESR1 (estrogen receptor 1) [NCBI Gene 2099], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475]
- **Chemicals:** formononetin (PubChem CID 5280378), glutathione (GSH) (PubChem CID 124886)

## Full-text entities

- **Genes:** CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IRS2 (insulin receptor substrate 2) [NCBI Gene 8660] {aka IRS-2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, ULK1 (unc-51 like autophagy activating kinase 1) [NCBI Gene 8408] {aka ATG1, ATG1A, UNC51, Unc51.1, hATG1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, ATG13 (autophagy related 13) [NCBI Gene 9776] {aka KIAA0652, PARATARG8}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}
- **Diseases:** hepatic steatosis (MESH:D005234), obesity (MESH:D009765), multi-organ injury (MESH:D009102), Online Mendelian Inheritance in Man (MESH:D030342), metabolic disorder (MESH:D008659), Inflammatory (MESH:D007249), injury (MESH:D014947), Comorbidity (MESH:D004194), hyperglycemia (MESH:D006943), NAFLD (MESH:D065626), liver, kidneys (MESH:D051437), tumors (MESH:D009369), diabetes (MESH:D003920), liver fibrosis (MESH:D008103), T2DM (MESH:D003924), hepatocellular injury (MESH:D056486), dysfunction of (MESH:D006331), diabetic liver injury (MESH:D017093), cardiovascular system (MESH:D018376), lipid (MESH:D011017), chronic (MESH:D002908), hepatic lipid metabolism disorders (MESH:D052439), hepatic insulin resistance (MESH:D007333)
- **Chemicals:** water (MESH:D014867), leucine (MESH:D007930), CCK-8 (MESH:D012844), valine (MESH:D014633), Formononetin (MESH:C007768), glycogen (MESH:D006003), free fatty acids (MESH:D005230), Oil Red O (MESH:C011049), Trizol (MESH:C411644), SDS (MESH:D012967), isopropanol (MESH:D019840), cholesterol (MESH:D002784), TGs (MESH:C026285), calycosin (MESH:C121707), NaCl (MESH:D012965), phosphatidylinositol (MESH:D010716), polysaccharides (MESH:D011134), TG (MESH:D014280), alanine (MESH:D000409), polyacrylamide (MESH:C016679), carbon (MESH:D002244), streptomycin (MESH:D013307), GSH (MESH:D005978), CO2 (MESH:D002245), Lipid (MESH:D008055), paraformaldehyde (MESH:C003043), FM (MESH:D005286), palmitic acid (MESH:D019308), PBS (MESH:D007854), oleic acid (MESH:D019301), Hydrogen (MESH:D006859), PVDF (MESH:C024865), alcohol (MESH:D000438), simvastatin (MESH:D019821), D-(+)-Glucose (MESH:D005947), saponins (MESH:D012503), ROS (MESH:D017382), SCFA (MESH:D005232), KE00139 (-), curcumin (MESH:D003474), Hematoxylin (MESH:D006416), penicillin (MESH:D010406), isoflavone (MESH:D007529), MDA (MESH:D008315), fatty acid (MESH:D005227)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Astragalus membranaceus (species) [taxon 649199], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G308A
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), TCH-C196 — Homo sapiens (Human), Finite cell line (CVCL_6B32)

## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12944351/full.md

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Source: https://tomesphere.com/paper/PMC12944351