# From Model Plants to Staple Crops: Molecular Mechanisms of Plant Saline–Alkali Tolerance

**Authors:** Delong Fan, Jing Ruan, Qinan Xu, Jiezheng Ying, Yifeng Wang, Xiaohong Tong, Zhiyong Li, Yu Cheng, Dawei Xue, Jian Zhang, Jie Huang

PMC · DOI: 10.3390/plants15040532 · 2026-02-08

## TL;DR

This paper reviews how plants, including staple crops, tolerate salty and alkaline soils, highlighting shared and unique molecular strategies for survival.

## Contribution

The paper compares molecular mechanisms of saline-alkali tolerance across model and staple crops, identifying species-specific adaptations and future breeding strategies.

## Key findings

- Plants use conserved mechanisms like the SOS pathway and ROS scavenging to tolerate saline-alkali stress.
- Rice uses root barriers and ion filters, while maize relies on C4 photosynthesis and osmotic adjustment.
- Wheat detoxifies ions via TaHKT alleles and vacuolar sequestration.

## Abstract

Soil salinization, as a key constraint to global agricultural sustainable development, has threatened over one billion hectares of farmland, posing severe challenges to staple crop production. Therefore, this review summarizes important advances in the molecular mechanisms of salt–alkali tolerance from the model plant Arabidopsis thaliana to staple crops (rice, maize, and wheat) and compares the commonalities and differences in physiological structure and molecular regulatory networks among these species. Studies have shown that plants respond to saline–alkali stress mainly through conserved mechanisms, including salt overly sensitive (SOS) signaling pathway-mediated ion homeostasis, accumulation of osmoprotectants, reactive oxygen species (ROS) scavenging, and coordination of multiple hormone signals. However, different species have evolved unique adaptive strategies: Arabidopsis has revealed core regulatory pathways, but its simple root system limits direct application in crops; rice employs root barriers and a stem node “ion filter” to precisely regulate Na+ transport; maize utilizes the C4 photosynthetic pathway along with efficient osmotic adjustment and tissue compartmentalization to enhance tolerance; and wheat achieves ion detoxification through TaHKT allele variation and vacuolar sequestration. Looking forward, future breeding for salt–alkali tolerance should adopt a “crop-centric” approach, focusing on the mining and molecular design of superior alleles, combined with gene editing and multi-trait integration, to provide a theoretical basis and strategic support for developing high-yield and stable crop varieties adapted to saline–alkali lands.

## Linked entities

- **Genes:** XYLT2 (xylosyltransferase 2) [NCBI Gene 64132]
- **Species:** Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Genes:** LOC542372 (phosphoenolpyruvate carboxylase 1) [NCBI Gene 542372] {aka GRMZM2G083841, PEPC1, PEPCase, PPC1, PPEPC4, pep1}, APX1 (ascorbate peroxidase 1) [NCBI Gene 837304] {aka ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2}, ZmHP2 [NCBI Gene 541625], SHM1 (serine transhydroxymethyltransferase 1) [NCBI Gene 829949] {aka F20D10.50, F20D10_50, SERINE HYDROXYMETHYLTRANSFERASE 1, SERINE TRANSHYDROXYMETHYLASE, SERINE TRANSHYDROXYMETHYLTRANSFERASE, SHMT1}, WRKY [NCBI Gene 100147737], CAT2 (catalase 2) [NCBI Gene 829661] {aka CATALASE, T12J5.2, catalase 2}, LOC606322 (sodium/hydrogen exchanger 2) [NCBI Gene 606322] {aka NHX1, NHX2, TaNHX1}, phosphoenolpyruvate carboxylase [NCBI Gene 103647543], SOS1 (sodium proton exchanger, putative (NHX7) (SOS1)) [NCBI Gene 814729] {aka ARABIDOPSIS NA+/H+ ANTIPORTER 7, ARABIDOPSIS SALT OVERLY SENSITIVE 1, ATNHX7, ATSOS1, F14H20.5, F14H20_5}, NHX1 (Na+/H+ exchanger 1) [NCBI Gene 832773] {aka AT-NHX1, ATNHX, ATNHX1, NA(+)/H(+) ANTIPORTER, Na+/H+ exchanger 1, T21B4.60}, SOS2 (Protein kinase superfamily protein) [NCBI Gene 833502] {aka ATSOS2, CBL-INTERACTING PROTEIN KINASE 24, CIPK24, K21B8.3, K21B8_3, SALT OVERLY SENSITIVE 2}, Histone acetyltransferase [NCBI Gene 542083], EIN3 (Ethylene insensitive 3 family protein) [NCBI Gene 821625] {aka AtEIN3, ETHYLENE-INSENSITIVE3}, PP2C [NCBI Gene 542176], ERD5 (Methylenetetrahydrofolate reductase family protein) [NCBI Gene 822833] {aka ARABIDOPSIS THALIANA PROLINE OXIDASE, AT-POX, ATPDH, ATPOX, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1}, P5CS1 (delta1-pyrroline-5-carboxylate synthase 1) [NCBI Gene 818566] {aka ATP5CS, T5I7.10, T5I7_10, delta1-pyrroline-5-carboxylate synthase 1}, SOS3 (Calcium-binding EF-hand family protein) [NCBI Gene 832494] {aka ATSOS3, CALCINEURIN B-LIKE PROTEIN 4, CBL4, MOP9.19, MOP9_19, SALT OVERLY SENSITIVE 3}, NHX2 (sodium hydrogen exchanger 2) [NCBI Gene 819665] {aka ATNHX2, T9J14.2, T9J14_2, sodium hydrogen exchanger 2}, CDPK [NCBI Gene 606407], CBL10 (calcineurin B-like protein 10) [NCBI Gene 829437] {aka ATCBL10, F26P21.120, F26P21_120, SCABP8, SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10}, CaM [NCBI Gene 542415], UBP16 (ubiquitin-specific protease 16) [NCBI Gene 828558] {aka F22K18.240, F22K18_240, ubiquitin-specific protease 16}
- **Diseases:** nutrient deficiencies (MESH:D007153), SOS (MESH:D013651), drought (MESH:C536747), injury to (MESH:D014947), ion toxicity (MESH:D064420), dehydration (MESH:D003681)
- **Chemicals:** Alkali (MESH:D000468), sucrose (MESH:D013395), cytokinin (MESH:D003583), carotenoids (MESH:D002338), GSH (MESH:D005978), Ion (MESH:D007477), CO2 (MESH:D002245), phospholipid (MESH:D010743), H2O (MESH:D014867), polyamines (MESH:D011073), calcium (MESH:D002118), ROS (MESH:D017382), chloride (MESH:D002712), malate (MESH:C030298), diterpenoids (MESH:D004224), Trehalose (MESH:D014199), JA (MESH:C011006), H+ (MESH:D006859), ascorbic acid (MESH:D001205), BR (MESH:D060406), glycine betaine (MESH:D001622), Na+ (MESH:D012964), SA (MESH:D020156), K+ (MESH:D011188), proton (MESH:D011522), PI (MESH:D010716), Salt (MESH:D012492), phosphorus (MESH:D010758), acids (MESH:D000143), Saline (MESH:D012965), PA (MESH:D011478), melatonin (MESH:D008550), ABA (MESH:D000040), proline (MESH:D011392), ASA (-), H2O2 (MESH:D006861), HCO3- (MESH:D001639), MDA (MESH:D008315), carbon (MESH:D002244), Cl- (MESH:D002713), nitrogen (MESH:D009584), peroxides (MESH:D010545), ethylene (MESH:C036216)
- **Species:** Oryza sativa (Asian cultivated rice, species) [taxon 4530], Sporobolus alterniflorus (salt marsh cordgrass, species) [taxon 29706], Sorghum bicolor (broomcorn, species) [taxon 4558], Triticum aestivum (bread wheat, species) [taxon 4565], Nicotiana tabacum (American tobacco, species) [taxon 4097], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Pseudomonas aeruginosa (species) [taxon 287], Zea mays (maize, species) [taxon 4577]
- **Cell lines:** MTU1010 — Homo sapiens (Human), Finite cell line (CVCL_L959)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12944350/full.md

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Source: https://tomesphere.com/paper/PMC12944350