# Benzodioxin-Annulated Naphthalimides as Potent DNA Replication Stress Inducers with Dual p53-Dependent and Independent Antitumor Activity

**Authors:** Zlatina Vlahova, Lazar Lazarov, Maria Petrova, Shazie Yusein-Myashkova, Monika Mutovska, Stanimir Stoyanov, Yulian Zagranyarski, Iva Ugrinova

PMC · DOI: 10.3390/pharmaceutics18020167 · 2026-01-27

## TL;DR

This study introduces a new compound that causes DNA replication stress and shows strong antitumor activity in cancer cells.

## Contribution

A novel naphthalimide derivative (compound 5a) is identified as a potent DNA replication stress inducer with dual p53-dependent and independent antitumor activity.

## Key findings

- Compound 5a shows strong cytotoxic effects in tumor cells with favorable selectivity over non-malignant cells.
- Treatment with 5a causes DNA synthesis inhibition and induces DNA damage markers like γH2AX.
- Compound 5a leads to cell-cycle arrest and apoptosis, indicating irreversible long-term cellular damage.

## Abstract

Background/Objectives: The development of small-molecule agents that selectively target DNA replication remains a central strategy in anticancer drug discovery. In this study, we report the biological characterization of a novel 6-nitro-benzodioxin-naphthalimide (NI) derivative (compound 5a), evaluated as a potential DNA-targeted anticancer lead. Methods/Results: The antiproliferative activity of 5a was assessed in a small panel of human lung carcinoma cell models (A549, H1299) and a non-malignant control (MRC-5), revealing pronounced cytotoxic effects in tumor cells, accompanied by favorable selectivity indices. Mechanistic investigations demonstrated that treatment with 5a results in strong inhibition of DNA synthesis, as evidenced by a marked reduction in EdU incorporation and a robust induction of the DNA damage marker γH2AX. These effects were associated with cell-cycle perturbations characterized by accumulation in G1 and G2/M phases, followed by activation of apoptotic pathways. Importantly, clonogenic survival assays confirmed that even transient exposure to 5a leads to a sustained loss of proliferative capacity, indicating irreversible long-term cellular damage. These results support a replication stress-driven mechanism of action for compound 5a, consistent with interference in DNA-associated processes during S phase. Conclusions: While the precise molecular initiating event remains to be elucidated, the observed biological profile positions 5a as a promising DNA-targeted lead structure with potential for further pharmaceutical optimization. These findings provide a solid foundation for the continued development of naphthalimide-based compounds as anticancer agents within a pharmaceutically relevant framework.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157]
- **Proteins:** H2AXA (Histone superfamily protein)
- **Chemicals:** compound 5a (PubChem CID 19434061), EdU (PubChem CID 472172)
- **Diseases:** lung carcinoma (MONDO:0005138)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** H2AX (H2A.X variant histone) [NCBI Gene 3014] {aka H2A.X, H2A/X, H2AFX}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, RPA1 (replication protein A1) [NCBI Gene 6117] {aka HSSB, MST075, PFBMFT6, REPA1, RF-A, RP-A}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, CHEK2 (checkpoint kinase 2) [NCBI Gene 11200] {aka CDS1, CHK2, HuCds1, LFS2, PP1425, RAD53}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** Cytotoxicity (MESH:D064420), necrotic (MESH:D009336), injury to (MESH:D014947), Lung Carcinoma (MESH:D008175), neurotoxic (MESH:D020258), Tumor (MESH:D009369), lung adenocarcinoma (MESH:D000077192), non-small cell lung cancer (MESH:D002289)
- **Chemicals:** silica (MESH:D012822), Doxorubicin (MESH:D004317), penicillin (MESH:D010406), CuSO4 (MESH:D019327), 2H (MESH:D003903), 1-bromobutane (MESH:C047757), C18H6N2O9 C (-), PI (MESH:D011419), potassium carbonate (MESH:C037593), crystal violet (MESH:D005840), dioxin (MESH:D004147), TFA (MESH:D014269), oil (MESH:D009821), amphotericin B (MESH:D000666), 2,3-dihydroxynaphthalene (MESH:C053499), MTT (MESH:C070243), amonafide (MESH:C037020), paraformaldehyde (MESH:C003043), potassium hydroxide (MESH:C029943), CO2 (MESH:D002245), DAPI (MESH:C007293), DMSO (MESH:D004121), ice (MESH:D007053), sulfuric acid (MESH:C033158), hydroxyurea (MESH:D006918), PBS (MESH:D007854), Tween 20 (MESH:D011136), H (MESH:D006859), bromine (MESH:D001966), formazan (MESH:D005562), NMP (MESH:C038678), silica gel (MESH:D058428), methanol (MESH:D000432), 3H (MESH:D014316), ester (MESH:D004952), acetonitrile (MESH:C032159), Triton X-100 (MESH:D017830), C (MESH:D002244), streptomycin (MESH:D013307), sodium nitrite (MESH:D012977), aphidicolin (MESH:D016590), FITC (MESH:D016650), 2-methyl-2-butanol (MESH:C032765), Naphthalimide (MESH:D053644), dichloromethane (MESH:D008752), N (MESH:D009584), hydrobromic acid (MESH:D018054), Aliquat 336 (MESH:C037759), catechol (MESH:C034221), 4-nitrocatechol (MESH:C001833), imide (MESH:D007094), N,N-dimethyl ethylenediamine (MESH:C027450), iron (MESH:D007501), water (MESH:D014867), phenol (MESH:D019800), anhydride (MESH:D000812), naphthalic anhydride (MESH:C012514), ethanol (MESH:D000431), cyclohexane (MESH:C506365), 13C (MESH:C000615229)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** MRC-5 — Homo sapiens (Human), Finite cell line (CVCL_0440), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060)

## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12944269/full.md

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Source: https://tomesphere.com/paper/PMC12944269